Browse Element(s) Details


OsAffx.213.1.S1_at

Description gb:NM_196175.1
DB_XREF= gi:37533709
TID=OsAffx.213.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0032N04.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2389010/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23860NANA10+11905648..11907040hypothetical protein
LOC_Os10g23870NANA10+11908080..11910038hypothetical protein
LOC_Os10g23880Os.51869.1.S1_at10/1110+11914169..11921133retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g23890OsAffx.213.1.S1_at10/1110+11924869..11926786retrotransposon protein, putative, unclassified
LOC_Os10g23900OsAffx.15086.1.S1_at1/1110+11929286..11930866Pyridoxal-dependent decarboxylase conserved domain containing protein
LOC_Os10g23910OsAffx.18365.1.S1_at10/1110+11932020..11933147hypothetical protein
LOC_Os10g23920OsAffx.212.1.S1_at11/1110+11936315..11936722retrotransposon protein, putative, unclassified
LOC_Os10g23940OsAffx.18366.1.S1_at10/1110+11950276..11951125hypothetical protein
LOC_Os10g23940OsAffx.30582.1.S1_s_at5/1110+11950276..11951125hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.213.1.S1_at--176--3651Chr10:11926532..11926556 (25 bp)
CTTCGACGCCATAACCGGCGGGTGG
LOC_Os10g23890
OsAffx.213.1.S1_at--996--7731NONE
GGTGGGCGGAACAAGCGCTCAAAAT
NONE
OsAffx.213.1.S1_at--659--2671Chr10:11925116..11925140 (25 bp)
AAGCGCTCAAAATCATGGCCAACGA
LOC_Os10g23890
OsAffx.213.1.S1_at--352--2591Chr10:11925096..11925120 (25 bp)
AACGAGGAGAAGTTGGACCTCTTCT
LOC_Os10g23890
OsAffx.213.1.S1_at--1048--5331Chr10:11925088..11925112 (25 bp)
GAAGTTGGACCTCTTCTTGAAGAAA
LOC_Os10g23890
OsAffx.213.1.S1_at--650--2311Chr10:11925026..11925050 (25 bp)
AAAGGAGCATATCAGATCTTCTCTC
LOC_Os10g23890
OsAffx.213.1.S1_at--658--9511Chr10:11925007..11925031 (25 bp)
TCTCTCCTTCAAGGCGACGGTAGAG
LOC_Os10g23890
OsAffx.213.1.S1_at--947--8491Chr10:11924966..11924990 (25 bp)
TGGAGTGGAAGGTGGATTCCCTTAA
LOC_Os10g23890
OsAffx.213.1.S1_at--88--8571Chr10:11924954..11924978 (25 bp)
TGGATTCCCTTAATTCGTCGGTAGT
LOC_Os10g23890
OsAffx.213.1.S1_at--902--3151Chr10:11924943..11924967 (25 bp)
AATTCGTCGGTAGTGTATTTGCAGA
LOC_Os10g23890
OsAffx.213.1.S1_at--371--10271Chr10:11924926..11924950 (25 bp)
TTTGCAGAACAAGCTGACACTGATG
LOC_Os10g23890
Target Sequence 
CTTCGACGCCATAACCGGCGGGTGGGAGCCGGCGGCGGCGGCGGGAGGGTGGGCGGAACAAGCGCTCAAAATCATGGCCA
ACGAGGAGAAGTTGGACCTCTTCTTGAAGAAAATGGTGGAGGAAGCGGCACAGAGAGTGGAGGCGGAGCAAAGGAGCATA
TCAGATCTTCTCTCCTTCAAGGCGACGGTAGAGGCATGGATTCCTGAGGTGGAGTGGAAGGTGGATTCCCTTAATTCGTC
GGTAGTGTATTTGCAGAACAAGCTGACACTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis