Browse Element(s) Details


OsAffx.18365.1.S1_at

Description tigr:9638.m01996
TID=OsAffx.18365.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2391010/11hypothetical protein
LOC_Os04g080341/11Polycomb protein EMBRYONIC FLOWER 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23860NANA10+11905648..11907040hypothetical protein
LOC_Os10g23870NANA10+11908080..11910038hypothetical protein
LOC_Os10g23880Os.51869.1.S1_at10/1110+11914169..11921133retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g23890OsAffx.213.1.S1_at10/1110+11924869..11926786retrotransposon protein, putative, unclassified
LOC_Os10g23900OsAffx.15086.1.S1_at1/1110+11929286..11930866Pyridoxal-dependent decarboxylase conserved domain containing protein
LOC_Os10g23910OsAffx.18365.1.S1_at10/1110+11932020..11933147hypothetical protein
LOC_Os10g23920OsAffx.212.1.S1_at11/1110+11936315..11936722retrotransposon protein, putative, unclassified
LOC_Os10g23940OsAffx.18366.1.S1_at10/1110+11950276..11951125hypothetical protein
LOC_Os10g23940OsAffx.30582.1.S1_s_at5/1110+11950276..11951125hypothetical protein
LOC_Os10g23950Os.26886.2.S1_s_at11/1110+11953905..11954998hypothetical protein
LOC_Os10g23950Os.26886.6.S1_s_at10/1110+11953905..11954998hypothetical protein
LOC_Os10g23950OsAffx.16467.1.S1_at9/1110+11953905..11954998hypothetical protein
LOC_Os10g23950OsAffx.3425.1.S1_at1/1110+11953905..11954998hypothetical protein
LOC_Os10g23960NANA10+11955197..11955646hypothetical protein
LOC_Os10g23970NANA10+11955887..11957020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g23980OsAffx.26148.1.S1_at6/1110+11957668..11958957hypothetical protein
LOC_Os10g23980OsAffx.26148.1.S1_x_at4/1110+11957668..11958957hypothetical protein
LOC_Os10g23980OsAffx.31076.1.S1_x_at2/1110+11957668..11958957hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0009960biological_processendosperm development
GO:0010048biological_processvernalization response
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18365.1.S1_at--349--6831Chr10:11933091..11933115 (25 bp)
GTTTACATCTCCTAAGTACAATTGT
LOC_Os10g23910
OsAffx.18365.1.S1_at--62--7051Chr10:11933076..11933100 (25 bp)
GTACAATTGTTTCATAGGGACTATA
LOC_Os10g23910
OsAffx.18365.1.S1_at--574--5691NONE
GACTATACATTGTTATTGGTGCCAA
NONE
OsAffx.18365.1.S1_at--787--33Chr02:23491899..23491995 (25 bp)
ATTGGTGCCAAGGATCTATTTGTAA
NONE
OsAffx.18365.1.S1_at--365--8711Chr10:11932158..11932182 (25 bp)
TGTCCTCAACGCCAATGACATTGAT
LOC_Os10g23910
OsAffx.18365.1.S1_at--99--5691Chr10:11932142..11932166 (25 bp)
GACATTGATGTCATTCCCTTCTTCG
LOC_Os10g23910
OsAffx.18365.1.S1_at--617--7131Chr10:11932133..11932157 (25 bp)
GTCATTCCCTTCTTCGTATTAGTGA
LOC_Os10g23910
OsAffx.18365.1.S1_at--224--4031Chr10:11932119..11932143 (25 bp)
CGTATTAGTGACTTCCATGAGGGAC
LOC_Os10g23910
OsAffx.18365.1.S1_at--1104--2571Chr10:11932085..11932109 (25 bp)
AACGTAAATGTCACTGGCGCTGTCA
LOC_Os10g23910
OsAffx.18365.1.S1_at--36--7111Chr10:11932076..11932100 (25 bp)
GTCACTGGCGCTGTCATATTGAACC
LOC_Os10g23910
OsAffx.18365.1.S1_at--299--7132Chr04:4274466..4274496 (25 bp)
GTCATATTGAACCATGGCACCAAGA
LOC_Os04g08034
Target Sequence 
GTTTACATCTCCTAAGTACAATTGTTTCATAGGGACTATACATTGTTATTGGTGCCAAGGATCTATTTGTAAATATCTTT
TTAACAAATTTGTCCTCAACGCCAATGACATTGATGTCATTCCCTTCTTCGTATTAGTGACTTCCATGAGGGACAAGGAG
GACAACGTAAATGTCACTGGCGCTGTCATATTGAACCATGGCACCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis