Browse Element(s) Details


OsAffx.212.1.S1_at

Description gb:NM_196177.1
DB_XREF= gi:37533713
TID=OsAffx.212.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein similar to putative retroelements (OSJNBa0032N04.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2392011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g23880Os.51869.1.S1_at10/1110+11914169..11921133retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g23890OsAffx.213.1.S1_at10/1110+11924869..11926786retrotransposon protein, putative, unclassified
LOC_Os10g23900OsAffx.15086.1.S1_at1/1110+11929286..11930866Pyridoxal-dependent decarboxylase conserved domain containing protein
LOC_Os10g23910OsAffx.18365.1.S1_at10/1110+11932020..11933147hypothetical protein
LOC_Os10g23920OsAffx.212.1.S1_at11/1110+11936315..11936722retrotransposon protein, putative, unclassified
LOC_Os10g23940OsAffx.18366.1.S1_at10/1110+11950276..11951125hypothetical protein
LOC_Os10g23940OsAffx.30582.1.S1_s_at5/1110+11950276..11951125hypothetical protein
LOC_Os10g23950Os.26886.2.S1_s_at11/1110+11953905..11954998hypothetical protein
LOC_Os10g23950Os.26886.6.S1_s_at10/1110+11953905..11954998hypothetical protein
LOC_Os10g23950OsAffx.16467.1.S1_at9/1110+11953905..11954998hypothetical protein
LOC_Os10g23950OsAffx.3425.1.S1_at1/1110+11953905..11954998hypothetical protein
LOC_Os10g23960NANA10+11955197..11955646hypothetical protein
LOC_Os10g23970NANA10+11955887..11957020transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g23980OsAffx.26148.1.S1_at6/1110+11957668..11958957hypothetical protein
LOC_Os10g23980OsAffx.26148.1.S1_x_at4/1110+11957668..11958957hypothetical protein
LOC_Os10g23980OsAffx.31076.1.S1_x_at2/1110+11957668..11958957hypothetical protein
LOC_Os10g23990Os.26886.3.S1_x_at6/1110+11959730..11962544transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g23990Os.26886.1.S1_x_at6/1110+11959730..11962544transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.212.1.S1_at--711--4371Chr10:11936377..11936401 (25 bp)
CCAACATCCCCATCGGGTGAGGCTG
LOC_Os10g23920
OsAffx.212.1.S1_at--566--8352Chr10:11936401..11936425 (25 bp)
GGCGGCCTGGTCTTTGTGGCGAGTC
LOC_Os10g23920
OsAffx.212.1.S1_at--625--3371Chr10:11936459..11936483 (25 bp)
CAGCCTCACGGCCAGATCTTTGTGG
LOC_Os10g23920
OsAffx.212.1.S1_at--443--1951Chr10:11936466..11936490 (25 bp)
ACGGCCAGATCTTTGTGGCGAGTCT
LOC_Os10g23920
OsAffx.212.1.S1_at--52--451Chr10:11936474..11936498 (25 bp)
ATCTTTGTGGCGAGTCTGCGGAATG
LOC_Os10g23920
OsAffx.212.1.S1_at--319--1131Chr10:11936486..11936510 (25 bp)
AGTCTGCGGAATGTTCGATGGCCCC
LOC_Os10g23920
OsAffx.212.1.S1_at--1108--2511Chr10:11936525..11936549 (25 bp)
AACTTCACCGAGATGTGCAACGGCA
LOC_Os10g23920
OsAffx.212.1.S1_at--37--9831Chr10:11936579..11936603 (25 bp)
TACACGACAATCATAGAGGCGGTGG
LOC_Os10g23920
OsAffx.212.1.S1_at--1028--3811Chr10:11936645..11936669 (25 bp)
CTCCAGGGCCAAGTGCAGGGTACAC
LOC_Os10g23920
OsAffx.212.1.S1_at--45--1071Chr10:11936661..11936685 (25 bp)
AGGGTACACTTATGGACATGCCGCC
LOC_Os10g23920
OsAffx.212.1.S1_at--630--7031Chr10:11936664..11936688 (25 bp)
GTACACTTATGGACATGCCGCCTGC
LOC_Os10g23920
Target Sequence 
CCAACATCCCCATCGGGTGAGGCTGGCGGCCTGGTCTTTGTGGCGAGTCTTCGGAATATCCGATGACCCCCAAAGTTTTG
GCCAGCCTCACGGCCAGATCTTTGTGGCGAGTCTGCGGAATGTTCGATGGCCCCCAAAGTTCCAGCCCAACTTCACCGAG
ATGTGCAACGGCAGCGTTAACCCCTCCGAGTCCCTCCAGATCTACACGACAATCATAGAGGCGGTGGGGGGTGACGACCG
GGTCAAGGCGAACCTCTTCCCCATGGCCCTCCAGGGCCAAGTGCAGGGTACACTTATGGACATGCCGCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis