Browse Element(s) Details


OsAffx.21367.1.S1_at

Description gb:NM_192750.1
DB_XREF= gi:34912583
GEN=P0046B10.8
TID=OsAffx.21367.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0046B10.8 (P0046B10.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g426002/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42580NANA1+24532774..24533520hypothetical protein
LOC_Os01g42590NANA1+24536421..24541555retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g42600OsAffx.21367.1.S1_at2/111+24556750..24557001hypothetical protein
LOC_Os01g42610OsAffx.11443.1.S1_at11/111+24561477..24565837Terpene synthase family, metal binding domain containing protein
LOC_Os01g42620Os.29404.2.S1_at11/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42620Os.29404.2.S1_x_at11/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42620Os.29404.1.S1_at10/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42630Os.14338.1.S1_at10/111+24573980..24576193C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os01g42630Os.14338.1.S1_x_at7/111+24573980..24576193C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os01g42640OsAffx.11444.1.S1_at11/111+24576732..24577585ribosomal protein S11 containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21367.1.S1_at--624--9591Chr01:24556313..24556337 (25 bp)
TCATTCCAGGAATCCAGGTATACAC
NONE
OsAffx.21367.1.S1_at--725--4331Chr01:24556318..24556342 (25 bp)
CCAGGAATCCAGGTATACACACGCT
NONE
OsAffx.21367.1.S1_at--241--5271Chr01:24556322..24556346 (25 bp)
GAATCCAGGTATACACACGCTGGTC
NONE
OsAffx.21367.1.S1_at--34--4351Chr01:24556326..24556350 (25 bp)
CCAGGTATACACACGCTGGTCGGCA
NONE
OsAffx.21367.1.S1_at--87--8611Chr01:24556342..24556575 (25 bp)
TGGTCGGCAGCCAGATATAGCCCCG
NONE
OsAffx.21367.1.S1_at--251--3211Chr01:24556737..24556761 (25 bp)
CAAGGCGTCAGCGATGGAGTCTCTC
NONE
OsAffx.21367.1.S1_at--294--911Chr01:24556739..24556763 (25 bp)
AGGCGTCAGCGATGGAGTCTCTCCG
NONE
OsAffx.21367.1.S1_at--215--9671Chr01:24556744..24556768 (25 bp)
TCAGCGATGGAGTCTCTCCGGATAG
NONE
OsAffx.21367.1.S1_at--1021--4051Chr01:24556748..24556772 (25 bp)
CGATGGAGTCTCTCCGGATAGCGGT
NONE
OsAffx.21367.1.S1_at--183--10651Chr01:24556877..24556901 (25 bp)
TTCCCATCGGCGCTGGCGGCACTAG
LOC_Os01g42600
OsAffx.21367.1.S1_at--78--8491Chr01:24556890..24556914 (25 bp)
TGGCGGCACTAGGAGATGCGGCGGA
LOC_Os01g42600
Target Sequence 
TCATTCCAGGAATCCAGGTATACACACGCTGGTCGGCAGCCAGATATAGCCCCGCCGCCGCCAGAGCTGACCGGCGTCTG
CGCGGCGGCTAGGACGGTGGCAGTGGGGAGGTGGGAGGCGGAGGGATGGCTGGAGGTGGTCGGGAGGGCGGTGGGGAGCG
GCAAGGCGTCAGCGATGGAGTCTCTCCGGATAGCGGTAGGGGCGGTGAAGCACGGCGGTGGCCCAGTGGCGGCGGCAGCC
CTAGGGGCAGTGGTGGCCCAGCGGCTCCCGTCGGCATTGGCAACCCTTGGGGCGGCGGCAGTTCCCATCGGCGCTGGCGG
CACTAGGAGATGCGGCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis