Browse Element(s) Details


OsAffx.11443.1.S1_at

Description tigr:9629.m04087
TID=OsAffx.11443.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Terpene synthase family, metal binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4261011/11Terpene synthase family, metal binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42590NANA1+24536421..24541555retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g42600OsAffx.21367.1.S1_at2/111+24556750..24557001hypothetical protein
LOC_Os01g42610OsAffx.11443.1.S1_at11/111+24561477..24565837Terpene synthase family, metal binding domain containing protein
LOC_Os01g42620Os.29404.2.S1_at11/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42620Os.29404.2.S1_x_at11/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42620Os.29404.1.S1_at10/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42630Os.14338.1.S1_at10/111+24573980..24576193C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os01g42630Os.14338.1.S1_x_at7/111+24573980..24576193C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os01g42640OsAffx.11444.1.S1_at11/111+24576732..24577585ribosomal protein S11 containing protein
LOC_Os01g42650Os.3455.1.S1_at11/111+24582170..24586788cytochrome c oxidase subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11443.1.S1_at--702--7391Chr01:24564720..24564744 (25 bp)
GTGTCCCTCGTAACCGGAGGTGCTA
LOC_Os01g42610
OsAffx.11443.1.S1_at--419--7371Chr01:24564778..24564802 (25 bp)
GTGACATAGCTACCAAGGATGCCTT
LOC_Os01g42610
OsAffx.11443.1.S1_at--1026--991Chr01:24564793..24564817 (25 bp)
AGGATGCCTTTGATTGGGCCTTGTC
LOC_Os01g42610
OsAffx.11443.1.S1_at--881--31Chr01:24564805..24564829 (25 bp)
ATTGGGCCTTGTCTTACGCTGATGC
LOC_Os01g42610
OsAffx.11443.1.S1_at--710--10471Chr01:24564818..24564842 (25 bp)
TTACGCTGATGCTGGCAGGGCCTTT
LOC_Os01g42610
OsAffx.11443.1.S1_at--776--4451Chr01:24564837..24564861 (25 bp)
GCCTTTGGAGAGGTGTCACGTTTCA
LOC_Os01g42610
OsAffx.11443.1.S1_at--216--7551Chr01:24565541..24565565 (25 bp)
GTGGCCAATGCCGTGGAGTGTTACA
LOC_Os01g42610
OsAffx.11443.1.S1_at--766--2591Chr01:24565636..24565660 (25 bp)
AACCCTAAACCAGGCGCGCTTTGAG
LOC_Os01g42610
OsAffx.11443.1.S1_at--696--7971Chr01:24565689..24565713 (25 bp)
GGATCGCCAATGTGTCCATGTCCAT
LOC_Os01g42610
OsAffx.11443.1.S1_at--968--8491Chr01:24565729..24565753 (25 bp)
TGGCAAGAGGGACGGCTACACCAAT
LOC_Os01g42610
OsAffx.11443.1.S1_at--975--6011Chr01:24565778..24565802 (25 bp)
GAGAGTCATTTCGTCAACCCTATTC
LOC_Os01g42610
Target Sequence 
GTGTCCCTCGTAACCGGAGGTGCTATAGAATTACCTGTCAGTATAATCGTAGGCATGGGTGACATAGCTACCAAGGATGC
CTTTGATTGGGCCTTGTCTTACGCTGATGCTGGCAGGGCCTTTGGAGAGGTGTCACGTTTCATGGATGATTTGGCTGTAT
CACAGAATGGGAGGGAGAAGATGGACGTGGCCAATGCCGTGGAGTGTTACATGAAGGAGCATGGCGTGACAAGCGATGTC
GCGGAGGCGGAGATAAGTGAAATGGTGGAAGGCGCATGGAGAACCCTAAACCAGGCGCGCTTTGAGGACCGCGTGTACCT
CCCGTTCGTGCAGCGGATCGCCAATGTGTCCATGTCCATCGCCCTCCTCTTCCATGGCAAGAGGGACGGCTACACCAATA
GCCACGAGTTGAAGGATATGTTCGAGAGTCATTTCGTCAACCCTATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis