Browse Element(s) Details


Os.14338.1.S1_x_at

Description gb:NM_192752.1
DB_XREF= gi:34912587
GEN=P0046B10.11
TID=Os.14338.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.14338 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative DNA methyltransferase (P0046B10.11), mRNA.
PROD=putative DNA methyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g426307/11C-5 cytosine-specific DNA methylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42600OsAffx.21367.1.S1_at2/111+24556750..24557001hypothetical protein
LOC_Os01g42610OsAffx.11443.1.S1_at11/111+24561477..24565837Terpene synthase family, metal binding domain containing protein
LOC_Os01g42620Os.29404.2.S1_at11/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42620Os.29404.2.S1_x_at11/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42620Os.29404.1.S1_at10/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42630Os.14338.1.S1_at10/111+24573980..24576193C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os01g42630Os.14338.1.S1_x_at7/111+24573980..24576193C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os01g42640OsAffx.11444.1.S1_at11/111+24576732..24577585ribosomal protein S11 containing protein
LOC_Os01g42650Os.3455.1.S1_at11/111+24582170..24586788cytochrome c oxidase subunit, putative, expressed
LOC_Os01g42660OsAffx.23637.2.S1_s_at11/111+24591364..24593347hypothetical protein
LOC_Os01g42660OsAffx.23637.1.S1_at3/111+24591364..24593347hypothetical protein
LOC_Os01g42670OsAffx.23638.1.S1_at9/111+24596639..24599250hypothetical protein
LOC_Os01g42670OsAffx.23637.1.S1_at2/111+24596639..24599250hypothetical protein
LOC_Os01g42679NANA1+24599981..24600723NA

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14338.1.S1_x_at--1101--1751Chr01:24574398..24574793 (25 bp)
ACCTCGCTACTTTTGTCTGGCGAAA
LOC_Os01g42630
Os.14338.1.S1_x_at--998--8131Chr01:24574324..24574348 (25 bp)
GGACACCTACATTCCTAACATTGGT
LOC_Os01g42630
Os.14338.1.S1_x_at--1002--691Chr01:24574281..24574305 (25 bp)
ATGTAACCCGGATGAAGATGAGCTG
LOC_Os01g42630
Os.14338.1.S1_x_at--315--6311Chr01:24574265..24574289 (25 bp)
GATGAGCTGGAACTAGTATGCAAAC
LOC_Os01g42630
Os.14338.1.S1_x_at--368--9011Chr01:24574247..24574271 (25 bp)
TGCAAACCAATCAGTGACTTCCTTG
LOC_Os01g42630
Os.14338.1.S1_x_at--1089--7171Chr01:24574072..24574096 (25 bp)
GTCTGATGGATGCACCCCAAGTGGA
LOC_Os01g42630
Os.14338.1.S1_x_at--958--8751Chr01:24574030..24574054 (25 bp)
TGTAGTCCCGCTAAACTTGATTGAG
LOC_Os01g42630
Os.14338.1.S1_x_at--985--9891Chr01:24573684..24573826 (25 bp)
TACTAGCTACGTCCAATAACCTCAA
NONE
Os.14338.1.S1_x_at--291--4191Chr01:24573508..24573620 (25 bp)
CCCTCGTGAGGTTGCTAATCTGCAT
NONE
Os.14338.1.S1_x_at--98--9771Chr01:24573493..24573517 (25 bp)
TAATCTGCATTCTTTTCCATCGAGT
NONE
Os.14338.1.S1_x_at--180--6071Chr01:24573472..24573496 (25 bp)
GAGTTTCCACTTTCCGAATCACATA
NONE
Target Sequence 
ACCTCGCTACTTTTGTCTGGCGAAACGAGAACCTGTGAGTTTTCAAAATCCATCAGACAACAGCAAGCTGCTCCGGACAC
CTACATTCCTAACATTGGTAAGGGCAGGTCACAACAGATGTAACCCGGATGAAGATGAGCTGGAACTAGTATGCAAACCA
ATCAGTGACTTCCTTGAAACAATAATTAATGGGTCTGATGGATGCACCCCAAGTGGAATAATTTCTCAAGATTATGTAGT
CCCGCTAAACTTGATTGAGCGGTGGGGGAGTGCTATGGATATTGTATGCCCTGAATCAAAACGATGCTGTTGTTTTACCA
AAAGTTATTATCGCTATGTCAAGGGGACAGGCTCCTTACTAGCTACGTCCAATAACCTCAAACGAATTTCCAAAGAGGAC
CTTGAAATTTCTTCACTGAAGGAGTTAGGCTTACGATTTTTCACCCCTCGTGAGGTTGCTAATCTGCATTCTTTTCCATC
GAGTTTCCACTTTCCGAATCACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14338.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis