Browse Element(s) Details


Os.3455.1.S1_at

Description gb:AK071340.1
DB_XREF= gi:32981363
TID=Os.3455.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3455 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cytochrome c oxidase subunit Vb precursor (P0046B10.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089B16, full insert sequence.
FL= gb:AK071340.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4265011/11cytochrome c oxidase subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42610OsAffx.11443.1.S1_at11/111+24561477..24565837Terpene synthase family, metal binding domain containing protein
LOC_Os01g42620Os.29404.2.S1_at11/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42620Os.29404.2.S1_x_at11/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42620Os.29404.1.S1_at10/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42630Os.14338.1.S1_at10/111+24573980..24576193C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os01g42630Os.14338.1.S1_x_at7/111+24573980..24576193C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os01g42640OsAffx.11444.1.S1_at11/111+24576732..24577585ribosomal protein S11 containing protein
LOC_Os01g42650Os.3455.1.S1_at11/111+24582170..24586788cytochrome c oxidase subunit, putative, expressed
LOC_Os01g42660OsAffx.23637.2.S1_s_at11/111+24591364..24593347hypothetical protein
LOC_Os01g42660OsAffx.23637.1.S1_at3/111+24591364..24593347hypothetical protein
LOC_Os01g42670OsAffx.23638.1.S1_at9/111+24596639..24599250hypothetical protein
LOC_Os01g42670OsAffx.23637.1.S1_at2/111+24596639..24599250hypothetical protein
LOC_Os01g42679NANA1+24599981..24600723NA
LOC_Os01g42690Os.35061.1.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_x_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42700Os.8697.1.S2_at11/111+24609589..24612154expressed protein
LOC_Os01g42700Os.8697.1.S1_at11/111+24609589..24612154expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
GO:0005740cellular_componentmitochondrial envelope
GO:0004129molecular_functioncytochrome-c oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3455.1.S1_at--930--2911Chr01:24585979..24586002 (24 bp)
AAGGAGGCCCCAGCTGTCATTGAAT
LOC_Os01g42650
Os.3455.1.S1_at--737--2791Chr01:24586178..24586202 (25 bp)
AAGATGAACCGCATGAGTGCCCAGT
LOC_Os01g42650
Os.3455.1.S1_at--127--6111Chr01:24586192..24586216 (25 bp)
GAGTGCCCAGTCTGTTCACAATATT
LOC_Os01g42650
Os.3455.1.S1_at--216--691Chr01:24586411..24586435 (25 bp)
ATGACGACGAGCATCACCACTAAGG
LOC_Os01g42650
Os.3455.1.S1_at--956--4171Chr01:24586439..24586463 (25 bp)
CCCATGCCTCGTGGTTCTGATAATA
LOC_Os01g42650
Os.3455.1.S1_at--131--10491Chr01:24586491..24586515 (25 bp)
TTAAACCTTTTTAGCACCAGACTGC
LOC_Os01g42650
Os.3455.1.S1_at--1053--1931Chr01:24586519..24586543 (25 bp)
ACGGCGTCCTTGTTTATGAATGCAC
LOC_Os01g42650
Os.3455.1.S1_at--101--3571Chr01:24586661..24586685 (25 bp)
CATCAGCTGCGTTTTTCTTGTGTAT
LOC_Os01g42650
Os.3455.1.S1_at--647--7431Chr01:24586680..24586704 (25 bp)
GTGTATCCTAATGGCCATCTGGTGT
LOC_Os01g42650
Os.3455.1.S1_at--1117--8611Chr01:24586699..24586723 (25 bp)
TGGTGTGATGGACCTGTTCTATTCA
LOC_Os01g42650
Os.3455.1.S1_at--1061--7311Chr01:24586747..24586771 (25 bp)
GTGCTCAGTGAGTCCCTGTTTGCAA
LOC_Os01g42650
Target Sequence 
AAGGAGGCCCCAGCTGTCATTGAATCCTACTATAACAAGAGGATAGTTGGTTGTCCTGGTGGTGAAGGAGAGGATGAGCA
TGATGTTGTATGGTTCTGGTTGAAAAAAGATGAACCGCATGAGTGCCCAGTCTGTTCACAATATTTTGTGCTTAAGGTCA
TTGGTGATGGTGGTGATCCAGATGGACATGATGATGACGACGAGCATCACCACTAAGGACGCCCATGCCTCGTGGTTCTG
ATAATAAGAATTTGATGAGGCAGATGATTTCATTTAAACCTTTTTAGCACCAGACTGCTCTACGGCGTCCTTGTTTATGA
ATGCACACATTTGGCCATCAAGCAGGTGGTAGTTTTTTCCTTAGGGATTTTGTCCAAACAAAAAACTCATNCGANGCTTG
ACCTGTGCATTTCCTTCNGAGCATCATCGAATAAAAGATGACTGCATCAGCTGCGTTTTTCTTGTGTATCCTAATGGCCA
TCTGGTGTGATGGACCTGTTCTATTCAGATCATGCAACAGTTTATTTTCAGTGCTCAGTGAGTCCCTGTTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3455.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis