Browse Element(s) Details


Os.35061.2.S1_at

Description gb:NM_192757.1
DB_XREF= gi:34912597
GEN=P0046B10.16
TID=Os.35061.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0046B10.16 (P0046B10.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0046B10.16 (P0046B10.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4269011/11Phospholipase/Carboxylesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42650Os.3455.1.S1_at11/111+24582170..24586788cytochrome c oxidase subunit, putative, expressed
LOC_Os01g42660OsAffx.23637.2.S1_s_at11/111+24591364..24593347hypothetical protein
LOC_Os01g42660OsAffx.23637.1.S1_at3/111+24591364..24593347hypothetical protein
LOC_Os01g42670OsAffx.23638.1.S1_at9/111+24596639..24599250hypothetical protein
LOC_Os01g42670OsAffx.23637.1.S1_at2/111+24596639..24599250hypothetical protein
LOC_Os01g42679NANA1+24599981..24600723NA
LOC_Os01g42690Os.35061.1.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_x_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42700Os.8697.1.S2_at11/111+24609589..24612154expressed protein
LOC_Os01g42700Os.8697.1.S1_at11/111+24609589..24612154expressed protein
LOC_Os01g42710Os.1021.1.S1_at9/111+24619385..24626543LSD1 zinc finger family protein, expressed
LOC_Os01g42720Os.34525.2.S1_x_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.2.S1_at11/111+24626992..24628080expressed protein
LOC_Os01g42720OsAffx.11445.1.S1_s_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.1.S1_s_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.1.S1_x_at11/111+24626992..24628080expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35061.2.S1_at--1003--4831Chr01:24606666..24606690 (25 bp)
GCTACAGATTCTGATATTGCCGTTC
LOC_Os01g42690
Os.35061.2.S1_at--574--2131Chr01:24606669..24606693 (25 bp)
ACAGATTCTGATATTGCCGTTCTCC
LOC_Os01g42690
Os.35061.2.S1_at--924--1251Chr01:24606671..24606695 (25 bp)
AGATTCTGATATTGCCGTTCTCCTT
LOC_Os01g42690
Os.35061.2.S1_at--816--6571Chr01:24606672..24606696 (25 bp)
GATTCTGATATTGCCGTTCTCCTTT
LOC_Os01g42690
Os.35061.2.S1_at--587--9471Chr01:24606675..24606699 (25 bp)
TCTGATATTGCCGTTCTCCTTTTTA
LOC_Os01g42690
Os.35061.2.S1_at--723--8831Chr01:24606677..24606701 (25 bp)
TGATATTGCCGTTCTCCTTTTTACT
LOC_Os01g42690
Os.35061.2.S1_at--860--211Chr01:24606679..24606703 (25 bp)
ATATTGCCGTTCTCCTTTTTACTGA
LOC_Os01g42690
Os.35061.2.S1_at--1102--10691Chr01:24606682..24606706 (25 bp)
TTGCCGTTCTCCTTTTTACTGAAAT
LOC_Os01g42690
Os.35061.2.S1_at--610--4491Chr01:24606684..24606708 (25 bp)
GCCGTTCTCCTTTTTACTGAAATTG
LOC_Os01g42690
Os.35061.2.S1_at--571--11Chr01:24606689..24606713 (25 bp)
TCTCCTTTTTACTGAAATTGAAACA
LOC_Os01g42690
Os.35061.2.S1_at--862--9811Chr01:24607435..24607542 (25 bp)
TAAACCCTACAACGGCCTGGGGCAT
LOC_Os01g42690
Target Sequence 
GCTACAGATTCTGATATTGCCGTTCTCCTTTTTACTGAAATTGAAACAGGGTTTGATGTGGAGGACACTTCCGTGGATGG
CCGTGATGATATTGAAGGGCTTGATGCTTCAGCTGCACACGTTGCAAACCTACTGTCATCCGAGCCATCTGATGTGAAGC
TTGGGATAGGTGGTTTCAGCATGGGTGCTGCCGCTGCCCTCCACTCTGCTGCATGCTATGCTCATGGAAGATTCACAAAC
GGCGTTGCCTACCCGGTCACCCTCAGCGCCGTCATCGGTTTGAGCGGTTGGCTTCCCTGTTCAAGGACTCTGAAGAGCAA
GATGGACAGCTCTCAGACTGCACTGAGAAGGGCTGGTGCCTTACCAATCCTGCTCAGCCATGGAAGAGCTGATGAGGTTG
TCACCTACAGAAATGGTGAGAAATCAGCCGATTTCCTGCGAGGCTCGGGTTTTCAGTATCTGAATTTTAAACCCTACAAC
GGCCTGGGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35061.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis