Browse Element(s) Details


Os.35061.1.S1_at

Description gb:AK069125.1
DB_XREF= gi:32979149
TID=Os.35061.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0046B10.16 (P0046B10.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004J23, full insert sequence.
FL= gb:AK069125.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4269011/11Phospholipase/Carboxylesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42650Os.3455.1.S1_at11/111+24582170..24586788cytochrome c oxidase subunit, putative, expressed
LOC_Os01g42660OsAffx.23637.2.S1_s_at11/111+24591364..24593347hypothetical protein
LOC_Os01g42660OsAffx.23637.1.S1_at3/111+24591364..24593347hypothetical protein
LOC_Os01g42670OsAffx.23638.1.S1_at9/111+24596639..24599250hypothetical protein
LOC_Os01g42670OsAffx.23637.1.S1_at2/111+24596639..24599250hypothetical protein
LOC_Os01g42679NANA1+24599981..24600723NA
LOC_Os01g42690Os.35061.1.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_x_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42700Os.8697.1.S2_at11/111+24609589..24612154expressed protein
LOC_Os01g42700Os.8697.1.S1_at11/111+24609589..24612154expressed protein
LOC_Os01g42710Os.1021.1.S1_at9/111+24619385..24626543LSD1 zinc finger family protein, expressed
LOC_Os01g42720Os.34525.2.S1_x_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.2.S1_at11/111+24626992..24628080expressed protein
LOC_Os01g42720OsAffx.11445.1.S1_s_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.1.S1_s_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.1.S1_x_at11/111+24626992..24628080expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35061.1.S1_at--94--4191Chr01:24607439..24607463 (25 bp)
CCCTACAACGGGTATAGACACACTT
LOC_Os01g42690
Os.35061.1.S1_at--803--5611Chr01:24607455..24607479 (25 bp)
GACACACTTACTTAATTTTCCCCAT
LOC_Os01g42690
Os.35061.1.S1_at--889--3511Chr01:24607514..24607538 (25 bp)
CATGATGCCATTTACACAGCCTGGG
LOC_Os01g42690
Os.35061.1.S1_at--642--6371Chr01:24607607..24607631 (25 bp)
GATCCCGCGGCTAATTCGAAAATAT
LOC_Os01g42690
Os.35061.1.S1_at--1120--431Chr01:24607630..24607654 (25 bp)
ATGAACCCGGTTCAGTGGCTTTGGT
LOC_Os01g42690
Os.35061.1.S1_at--363--3471Chr01:24607642..24607666 (25 bp)
CAGTGGCTTTGGTAGTGATGTATAA
LOC_Os01g42690
Os.35061.1.S1_at--287--10831Chr01:24607718..24607742 (25 bp)
TTGTGACAGTCATGGCTTTGGTAGC
LOC_Os01g42690
Os.35061.1.S1_at--164--8311Chr01:24607731..24607755 (25 bp)
GGCTTTGGTAGCATATGTAACACTA
LOC_Os01g42690
Os.35061.1.S1_at--841--7411Chr01:24607757..24607781 (25 bp)
GTGTTTTCCAAACAACTGCATACCA
LOC_Os01g42690
Os.35061.1.S1_at--973--3831Chr01:24607772..24607796 (25 bp)
CTGCATACCACGTTACAGTTGTAGT
LOC_Os01g42690
Os.35061.1.S1_at--297--10571Chr01:24607798..24607822 (25 bp)
TTCTACTGATGTACTTTGTTACCGC
LOC_Os01g42690
Target Sequence 
CCCTACAACGGGTATAGACACACTTACTTAATTTTCCCCATCTTCATTTTTTTCTCTGAAAACTAGAATAACTAACATGA
TGCCATTTACACAGCCTGGGGCATTATACCATCCCTGAAGAAATGGACGATGTCTGCAAGTGGCTCAGTTCAAGGCTGGG
ACTTGACCGATCCCGCGGCTAATTCGAAAATATGAACCCGGTTCAGTGGCTTTGGTAGTGATGTATAAGAGAAGAAGGTA
TTGACAATATACAGGAGAAGGTTGATTAGGATATGTGAATTGTGACAGTCATGGCTTTGGTAGCATATGTAACACTATGT
GTTTTCCAAACAACTGCATACCACGTTACAGTTGTAGTTTTCTACTGATGTACTTTGTTACCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis