Browse Element(s) Details


Os.35061.2.S1_x_at

Description gb:NM_192757.1
DB_XREF= gi:34912597
GEN=P0046B10.16
TID=Os.35061.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0046B10.16 (P0046B10.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0046B10.16 (P0046B10.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4269011/11Phospholipase/Carboxylesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42650Os.3455.1.S1_at11/111+24582170..24586788cytochrome c oxidase subunit, putative, expressed
LOC_Os01g42660OsAffx.23637.2.S1_s_at11/111+24591364..24593347hypothetical protein
LOC_Os01g42660OsAffx.23637.1.S1_at3/111+24591364..24593347hypothetical protein
LOC_Os01g42670OsAffx.23638.1.S1_at9/111+24596639..24599250hypothetical protein
LOC_Os01g42670OsAffx.23637.1.S1_at2/111+24596639..24599250hypothetical protein
LOC_Os01g42679NANA1+24599981..24600723NA
LOC_Os01g42690Os.35061.1.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_x_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42700Os.8697.1.S2_at11/111+24609589..24612154expressed protein
LOC_Os01g42700Os.8697.1.S1_at11/111+24609589..24612154expressed protein
LOC_Os01g42710Os.1021.1.S1_at9/111+24619385..24626543LSD1 zinc finger family protein, expressed
LOC_Os01g42720Os.34525.2.S1_x_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.2.S1_at11/111+24626992..24628080expressed protein
LOC_Os01g42720OsAffx.11445.1.S1_s_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.1.S1_s_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.1.S1_x_at11/111+24626992..24628080expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35061.2.S1_x_at--573--2131Chr01:24606669..24606693 (25 bp)
ACAGATTCTGATATTGCCGTTCTCC
LOC_Os01g42690
Os.35061.2.S1_x_at--1103--10691Chr01:24606682..24606706 (25 bp)
TTGCCGTTCTCCTTTTTACTGAAAT
LOC_Os01g42690
Os.35061.2.S1_x_at--142--6671Chr01:24606786..24606810 (25 bp)
GTTGCAAACCTACTGTCATCCGAGC
LOC_Os01g42690
Os.35061.2.S1_x_at--946--8191Chr01:24607013..24607037 (25 bp)
GGAAGATTCACAAACGGCGTTGCCT
LOC_Os01g42690
Os.35061.2.S1_x_at--1067--8271Chr01:24607077..24607199 (25 bp)
GGCTTCCCTGTTCAAGGACTCTGAA
LOC_Os01g42690
Os.35061.2.S1_x_at--33--6251Chr01:24607206..24607230 (25 bp)
GATGGACAGCTCTCAGACTGCACTG
LOC_Os01g42690
Os.35061.2.S1_x_at--882--5951Chr01:24607230..24607254 (25 bp)
GAGAAGGGCTGGTGCCTTACCAATC
LOC_Os01g42690
Os.35061.2.S1_x_at--347--2271Chr01:24607388..24607412 (25 bp)
AAATCAGCCGATTTCCTGCGAGGCT
LOC_Os01g42690
Os.35061.2.S1_x_at--62--4071Chr01:24607406..24607430 (25 bp)
CGAGGCTCGGGTTTTCAGTATCTGA
LOC_Os01g42690
Os.35061.2.S1_x_at--130--8291Chr01:24607538..24607562 (25 bp)
GGCATTATACCATCCCTGAAGAAAT
LOC_Os01g42690
Os.35061.2.S1_x_at--162--851Chr01:24607561..24607585 (25 bp)
ATGGACGATGTCTGCAAGTGGCTCA
LOC_Os01g42690
Target Sequence 
ACAGATTCTGATATTGCCGTTCTCCTTTTTACTGAAATTGAAACAGGGTTTGATGTGGAGGACACTTCCGTGGATGGCCG
TGATGATATTGAAGGGCTTGATGCTTCAGCTGCACACGTTGCAAACCTACTGTCATCCGAGCCATCTGATGTGAAGCTTG
GGATAGGTGGTTTCAGCATGGGTGCTGCCGCTGCCCTCCACTCTGCTGCATGCTATGCTCATGGAAGATTCACAAACGGC
GTTGCCTACCCGGTCACCCTCAGCGCCGTCATCGGTTTGAGCGGTTGGCTTCCCTGTTCAAGGACTCTGAAGAGCAAGAT
GGACAGCTCTCAGACTGCACTGAGAAGGGCTGGTGCCTTACCAATCCTGCTCAGCCATGGAAGAGCTGATGAGGTTGTCA
CCTACAGAAATGGTGAGAAATCAGCCGATTTCCTGCGAGGCTCGGGTTTTCAGTATCTGAATTTTAAACCCTACAACGGC
CTGGGGCATTATACCATCCCTGAAGAAATGGACGATGTCTGCAAGTGGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35061.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis