Browse Element(s) Details


Os.8697.1.S2_at

Description gb:CB632034
DB_XREF= gi:29627023
DB_XREF=OSIIEb10A09.r
CLONE=OSIIEb10A09
TID=Os.8697.1
CNT=47
FEA=FLmRNA
TIER=Stack
STK=14
UG=Os.8697 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0046B10.17 (P0046B10.17), mRNA
FL= gb:AK062906.1 gb:AK066561.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4270011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42650Os.3455.1.S1_at11/111+24582170..24586788cytochrome c oxidase subunit, putative, expressed
LOC_Os01g42660OsAffx.23637.2.S1_s_at11/111+24591364..24593347hypothetical protein
LOC_Os01g42660OsAffx.23637.1.S1_at3/111+24591364..24593347hypothetical protein
LOC_Os01g42670OsAffx.23638.1.S1_at9/111+24596639..24599250hypothetical protein
LOC_Os01g42670OsAffx.23637.1.S1_at2/111+24596639..24599250hypothetical protein
LOC_Os01g42679NANA1+24599981..24600723NA
LOC_Os01g42690Os.35061.1.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42690Os.35061.2.S1_x_at11/111+24603943..24607847Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g42700Os.8697.1.S2_at11/111+24609589..24612154expressed protein
LOC_Os01g42700Os.8697.1.S1_at11/111+24609589..24612154expressed protein
LOC_Os01g42710Os.1021.1.S1_at9/111+24619385..24626543LSD1 zinc finger family protein, expressed
LOC_Os01g42720Os.34525.2.S1_x_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.2.S1_at11/111+24626992..24628080expressed protein
LOC_Os01g42720OsAffx.11445.1.S1_s_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.1.S1_s_at11/111+24626992..24628080expressed protein
LOC_Os01g42720Os.34525.1.S1_x_at11/111+24626992..24628080expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8697.1.S2_at--236--91Chr01:24610361..24610385 (25 bp)
ATTCCCAGGCCACCACAGAAGAAGA
LOC_Os01g42700
Os.8697.1.S2_at--422--10411Chr01:24610313..24610337 (25 bp)
TTTTGGTCGTGAATCCTCCCCATTA
LOC_Os01g42700
Os.8697.1.S2_at--343--5791Chr01:24610228..24610252 (25 bp)
GACGACGTCACGCTATCAACAGAGG
LOC_Os01g42700
Os.8697.1.S2_at--812--491Chr01:24610202..24610226 (25 bp)
ATCGGCTGGTTCTCAGCATGATGGT
LOC_Os01g42700
Os.8697.1.S2_at--563--5331Chr01:24610177..24610201 (25 bp)
GAAGTCGATGGTGATCCTGCACATT
LOC_Os01g42700
Os.8697.1.S2_at--858--7331Chr01:24610125..24610149 (25 bp)
GTGCACCTGGACTGAAAAGCTCTAC
LOC_Os01g42700
Os.8697.1.S2_at--139--5171Chr01:24610098..24610122 (25 bp)
GCAAGCAATCTTTCGGGTTCACCAG
LOC_Os01g42700
Os.8697.1.S2_at--854--6691Chr01:24610036..24610060 (25 bp)
GTTCCATTTGGCTTTAGGCGTAGTC
LOC_Os01g42700
Os.8697.1.S2_at--437--2431Chr01:24609951..24609975 (25 bp)
AAAACCGCTGTGGAGTTGTCTTAGT
LOC_Os01g42700
Os.8697.1.S2_at--1016--9611Chr01:24609859..24609883 (25 bp)
TCATGTCCACGGCTAGGACTTGGGT
LOC_Os01g42700
Os.8697.1.S2_at--183--3831Chr01:24609822..24609846 (25 bp)
CTGCGTTGTAATTTGATCTCTGAAA
LOC_Os01g42700
Target Sequence 
ATTCCCAGGCCACCACAGAAGAAGAACAATTCTTCTGCTTGGGGAGGCTTTTGGTCGTGAATCCTCCCCATTAGGGGGAG
CAAGTGGCAGTGGTGATGGTGACACCACAGCTCGNGAAAATGATGAAGGTGATGACGACGTCACGCTATCAACAGAGGCA
TCGGCTGGTTCTCAGCATGATGGTGAAGTCGATGGTGATCCTGCACATTGATGCAGCTGGTAGGGAGTGCCAAGGCGTGC
ACCTGGACTGAAAAGCTCTACAAGCAAGCAATCTTTCGGGTTCACCAGGCATCCAAGACCACATGTTGGGAAGAAACATG
GGGGTGTTCCATTTGGCTTTAGGCGTAGTCAGGACATNCTGCCTACGTGCAAGAAGAACTGAGATGAAATTGCAATGCAG
GGATAGGCTCAAAACCGCTGTGGAGTTGTCTTAGTNTCATTTTTAATATATTTGCTGGAAGGTCTGTAGCAAACAGAAAC
ATCAATGGTGGTGGTNTATTTATCATGTCCACGGCTAGGACTTGGGTGAATTCAATTCNCTGCGTTGTAATTTGATCTCT
GAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8697.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis