Browse Element(s) Details


Os.29404.1.S1_at

Description gb:AK120659.1
DB_XREF= gi:37990282
TID=Os.29404.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0046B10.10 (P0046B10.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158F03, full insert sequence.
FL= gb:AK120659.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4262010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42600OsAffx.21367.1.S1_at2/111+24556750..24557001hypothetical protein
LOC_Os01g42610OsAffx.11443.1.S1_at11/111+24561477..24565837Terpene synthase family, metal binding domain containing protein
LOC_Os01g42620Os.29404.2.S1_at11/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42620Os.29404.2.S1_x_at11/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42620Os.29404.1.S1_at10/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42630Os.14338.1.S1_at10/111+24573980..24576193C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os01g42630Os.14338.1.S1_x_at7/111+24573980..24576193C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os01g42640OsAffx.11444.1.S1_at11/111+24576732..24577585ribosomal protein S11 containing protein
LOC_Os01g42650Os.3455.1.S1_at11/111+24582170..24586788cytochrome c oxidase subunit, putative, expressed
LOC_Os01g42660OsAffx.23637.2.S1_s_at11/111+24591364..24593347hypothetical protein
LOC_Os01g42660OsAffx.23637.1.S1_at3/111+24591364..24593347hypothetical protein
LOC_Os01g42670OsAffx.23638.1.S1_at9/111+24596639..24599250hypothetical protein
LOC_Os01g42670OsAffx.23637.1.S1_at2/111+24596639..24599250hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29404.1.S1_at--18--7791Chr01:24568428..24568452 (25 bp)
GGTGCGCGAGTCTGTTGATCATGTT
LOC_Os01g42620
Os.29404.1.S1_at--98--731Chr01:24568408..24568432 (25 bp)
ATGTTGTAGAACATCACCCTTGCCT
LOC_Os01g42620
Os.29404.1.S1_at--678--8071Chr01:24568320..24568344 (25 bp)
GGAGCAGCTCATGTCTTGATTCACC
LOC_Os01g42620
Os.29404.1.S1_at--606--10771Chr01:24568305..24568329 (25 bp)
TTGATTCACCTGATGCTCACTACAC
LOC_Os01g42620
Os.29404.1.S1_at--977--10451Chr01:24568275..24568299 (25 bp)
TTACCTCCTCTACTGGTTGTTCGGA
LOC_Os01g42620
Os.29404.1.S1_at--998--391Chr01:24567470..24567494 (25 bp)
AGTCTTAAAACGCTGTACTGGCTAA
LOC_Os01g42620
Os.29404.1.S1_at--91--31Chr01:24567424..24567448 (25 bp)
ATTGGAATCATCTGCCAGGCTTCTC
LOC_Os01g42620
Os.29404.1.S1_at--1--8651NONE
TGGGAGCACATCTTCATTCTTGACA
NONE
Os.29404.1.S1_at--125--131Chr01:24567251..24567275 (25 bp)
ATTCTTGACAGCTTTTCACTCGTGT
LOC_Os01g42620
Os.29404.1.S1_at--711--811Chr01:24567173..24567197 (25 bp)
ATGGTTTGTCGTTGCAATTGCCAAT
LOC_Os01g42620
Os.29404.1.S1_at--1018--3811Chr01:24567130..24567154 (25 bp)
CTGCCTACTGTTGCCTACAAATCAA
LOC_Os01g42620
Target Sequence 
GGTGCGCGAGTCTGTTGATCATGTTGTAGAACATCACCCTTGCCTGCAGTGTGCTCCCTCACCAAATCCAGAAATTCATC
ATAAAAGAGGATGGAGATGGAGACAGATGGAGCAGCTCATGTCTTGATTCACCTGATGCTCACTACACTCACATTACCTC
CTCTACTGGTTGTTCGGAGAGGCAAGGGGCGGCTGCCAAGAGAAGTAACTAGTAGAGGATGATCAATGAACATCTAAGAT
GCTCAATGAACGCTAATCAAAGGAGGATATGTTTGACAATGGGACAAAGTCTTAAAACGCTGTACTGGCTAAAGAAGAAC
AAATATATGGAATATTGGAATCATCTGCCAGGCTTCTCTGGGAGCACATCTTCATTCTTGACAGCTTTTCACTCGTGTCC
AAATCATAACGATTTTACCAAATATAAGGATTCTAGAAAGCTTCAAAGGTTATGGTTTGTCGTTGCAATTGCCAATGTCT
ATACTATCGTTCACCTGCCTACTGTTGCCTACAAATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis