Browse Element(s) Details


OsAffx.21462.1.S1_at

Description tigr:9635.m04985
TID=OsAffx.21462.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=acetyltransferase, GNAT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4929011/11acetyltransferase, GNAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49260Os.44781.1.S1_at11/117+29494265..29502340Importin-beta N-terminal domain containing protein, expressed
LOC_Os07g49270Os.8779.1.S1_at11/117+29503690..29510383AMP deaminase, putative, expressed
LOC_Os07g49280Os.38120.1.S1_at11/117+29509905..29514638expressed protein
LOC_Os07g49290OsAffx.21462.1.S1_at11/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49290OsAffx.21462.3.S1_x_at2/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49290OsAffx.21462.2.S1_x_at1/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49300Os.44779.2.S1_x_at11/117+29520749..29528909transducin family protein, putative, expressed
LOC_Os07g49300Os.44779.1.S1_at11/117+29520749..29528909transducin family protein, putative, expressed
LOC_Os07g49310Os.17623.1.S1_at11/117+29529574..29532424Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os07g49320Os.19304.1.S1_at11/117+29532776..29544001HEAT repeat family protein, expressed
LOC_Os07g49330Os.8107.1.S1_at11/117+29544148..29547285phosphoinositide-specific phospholipase C, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21462.1.S1_at--359--3891Chr07:29518640..29518664 (25 bp)
CTGTGCATGGCCTTGGATGTGCTCC
LOC_Os07g49290
OsAffx.21462.1.S1_at--996--6251Chr07:29518625..29518649 (25 bp)
GATGTGCTCCGCGAGTGTTTCGTCA
LOC_Os07g49290
OsAffx.21462.1.S1_at--356--511Chr07:29518437..29518583 (25 bp)
ATCGTCTTCAACACAGAATCGGAGC
LOC_Os07g49290
OsAffx.21462.1.S1_at--152--311Chr07:29518358..29518377 (20 bp)
ATAGCCGTGGCTACACTGAGAGTGT
LOC_Os07g49290
OsAffx.21462.1.S1_at--781--1131Chr07:29518172..29518196 (25 bp)
AGTGCCGCTGGTAGGGACTAGATTC
LOC_Os07g49290
OsAffx.21462.1.S1_at--52--3711Chr07:29518155..29518179 (25 bp)
CTAGATTCGCGCGTCGTCGGCAAGG
LOC_Os07g49290
OsAffx.21462.1.S1_at--1039--771Chr07:29518129..29518153 (25 bp)
ATGTGCCGCCTTCTCATGGATGAGA
LOC_Os07g49290
OsAffx.21462.1.S1_at--518--8511Chr07:29517928..29517952 (25 bp)
TGGACGGGACCATCATTTGGGTTCA
LOC_Os07g49290
OsAffx.21462.1.S1_at--993--8951Chr07:29517887..29517911 (25 bp)
TGACAGGCAGGATGTAGCACACCAT
LOC_Os07g49290
OsAffx.21462.1.S1_at--876--1071Chr07:29517846..29517870 (25 bp)
AGGGAACCATCATGTGCCACAAGCA
LOC_Os07g49290
OsAffx.21462.1.S1_at--102--9711Chr07:29517800..29517824 (25 bp)
TCAACCTCAACTTGGGCACACAACG
LOC_Os07g49290
Target Sequence 
CTGTGCATGGCCTTGGATGTGCTCCGCGAGTGTTTCGTCACCCTCATCGAGCCTCGCACGCAGACCGACCTCACTGCCGA
CATCGTCTTCAACACAGAATCGGAGCTGAGACGGCTAGATTTCCGGGGGTTTTACGTGGTAGGACTGGAGAAAGCCGGCG
AGCTTATAGCCGTGGCTACACTGAGAGTGTATGGAGAGGAAGTTGCAGAAGTGCCGCTGGTAGGGACTAGATTCGCGCGT
CGTCGGCAAGGGATGTGCCGCCTTCTCATGGATGAGATACAAAAGTTGCTTGGTGAGATGGGGGTGGAGAGGCTTGTGCT
GCCGGCGGTGCCGGAGATGGTGGCGACATGGACGGGACCATCATTTGGGTTCAGAGAGATGGGGCAGGCTGACAGGCAGG
ATGTAGCACACCATGCCATCCTCCGCTTCCAGGGAACCATCATGTGCCACAAGCAGCTACCTCCTCAACCTCAACCTCAA
CCTCAACTTGGGCACACAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis