Browse Element(s) Details


OsAffx.21462.2.S1_x_at

Description gb:NM_192319.1
DB_XREF= gi:34911721
GEN=P0707D10.25
TID=OsAffx.21462.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0707D10.25 (P0707D10.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g492901/11acetyltransferase, GNAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49260Os.44781.1.S1_at11/117+29494265..29502340Importin-beta N-terminal domain containing protein, expressed
LOC_Os07g49270Os.8779.1.S1_at11/117+29503690..29510383AMP deaminase, putative, expressed
LOC_Os07g49280Os.38120.1.S1_at11/117+29509905..29514638expressed protein
LOC_Os07g49290OsAffx.21462.1.S1_at11/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49290OsAffx.21462.3.S1_x_at2/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49290OsAffx.21462.2.S1_x_at1/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49300Os.44779.2.S1_x_at11/117+29520749..29528909transducin family protein, putative, expressed
LOC_Os07g49300Os.44779.1.S1_at11/117+29520749..29528909transducin family protein, putative, expressed
LOC_Os07g49310Os.17623.1.S1_at11/117+29529574..29532424Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os07g49320Os.19304.1.S1_at11/117+29532776..29544001HEAT repeat family protein, expressed
LOC_Os07g49330Os.8107.1.S1_at11/117+29544148..29547285phosphoinositide-specific phospholipase C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21462.2.S1_x_at--314--4391Chr01:26358366..26358390 (25 bp)
CCAATCCTAATCTCAATCTCAATCT
NONE
OsAffx.21462.2.S1_x_at--1116--431Chr01:26358381..26358405 (25 bp)
ATCTCAATCTGAGTCTTGGGCCCCT
NONE
OsAffx.21462.2.S1_x_at--1068--7551Chr01:26358398..26358422 (25 bp)
GGGCCCCTCTTCTTGAGGAATCGGA
NONE
OsAffx.21462.2.S1_x_at--485--491Chr01:26358417..26358441 (25 bp)
ATCGGATGACGACCAATACCAACAA
NONE
OsAffx.21462.2.S1_x_at--145--7851Chr01:26358467..26358491 (25 bp)
GGTACATTGCCTTCATGGAGGAGCA
NONE
OsAffx.21462.2.S1_x_at--479--4332Chr01:26358539..26358563 (25 bp)
CCATGGCCAAGGAGCTTCGGATCAA
NONE
OsAffx.21462.2.S1_x_at--207--2931Chr01:26358568..26358592 (25 bp)
AAGGACCAGCTCAGGTCGTTGTGGT
NONE
OsAffx.21462.2.S1_x_at--397--7731Chr01:26358590..26358614 (25 bp)
GGTGGACATTCTCGATGAAGGTCAA
NONE
OsAffx.21462.2.S1_x_at--957--8991Chr01:26358605..26358629 (25 bp)
TGAAGGTCAAGTACAACGGTCGCGA
NONE
OsAffx.21462.2.S1_x_at--890--1911Chr01:26358620..26358644 (25 bp)
ACGGTCGCGAGGAACTGTGCTACAC
NONE
OsAffx.21462.2.S1_x_at--598--3011Chr01:26358723..26358999 (25 bp)
AATGCAGACTCTCGTGACCCGTGGG
NONE
Target Sequence 
CCAATCCTAATCTCAATCTCAATCTGAGTCTTGGGCCCCTCTTCTTGAGGAATCGGATGACGACCAATACCAACAAGAAG
CAGATGAAGATGCCATCGCGGGGTACATTGCCTTCATGGAGGAGCAGAATGCCAGGCGCGGCCGCGGGCAGGGAAATGAT
GAGGAGCAGAGGTCCATGGCCAAGGAGCTTCGGATCAAGGCTAAGGACCAGCTCAGGTCGTTGTGGTGGACATTCTCGAT
GAAGGTCAAGTACAACGGTCGCGAGGAACTGTGCTACACAGAGCCGCGTGGCCGCTCCCACATCTCCCTCATCACCGCCT
GCAAAGCCTACCTTCTTCACCACACGCCCTCGACAACAATGCAGACTCTCGTGACCCGTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21462.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis