Browse Element(s) Details


OsAffx.21533.1.S1_at

Description gb:NM_191802.1
DB_XREF= gi:34910687
GEN=P0690B02.8
TID=OsAffx.21533.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0690B02.8 (P0690B02.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g456191/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45570NANA3+25673515..25676402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45580OsAffx.13365.1.S1_at11/113+25679220..25680497Zinc knuckle family protein, expressed
LOC_Os03g45580OsAffx.13365.1.S1_x_at11/113+25679220..25680497Zinc knuckle family protein, expressed
LOC_Os03g45590OsAffx.3521.1.S1_at11/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590OsAffx.3521.1.S1_x_at11/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590Os.46012.2.S1_x_at4/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590Os.27088.1.A1_x_at2/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590Os.46012.3.S1_x_at2/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590OsAffx.30387.1.S1_at1/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590Os.45902.1.A1_x_at1/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45619Os.10596.1.S1_at11/113+25700226..25714876Cytochrome P450 family protein, expressed
LOC_Os03g45619Os.51541.1.S1_at11/113+25700226..25714876Cytochrome P450 family protein, expressed
LOC_Os03g45619OsAffx.13368.1.S1_at10/113+25700226..25714876Cytochrome P450 family protein, expressed
LOC_Os03g45619OsAffx.21533.1.S1_at1/113+25700226..25714876Cytochrome P450 family protein, expressed
LOC_Os03g45650NANA3+25716331..25717631transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45670NANA3+25724443..25728965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g45680NANA3+25729214..25731012retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21533.1.S1_at--187--1311Chr01:30373613..30373637 (25 bp)
AGATGTTCTGACATGTAGGACCCAT
NONE
OsAffx.21533.1.S1_at--389--8711Chr01:30373600..30373624 (25 bp)
TGTAGGACCCATGTTGACTCAACGC
NONE
OsAffx.21533.1.S1_at--783--711Chr01:30373590..30373614 (25 bp)
ATGTTGACTCAACGCTGATGACTTG
NONE
OsAffx.21533.1.S1_at--308--2071Chr01:30373570..30373594 (25 bp)
ACTTGGGTCAAATTGCGATGCGGGA
NONE
OsAffx.21533.1.S1_at--653--9131Chr01:30373552..30373576 (25 bp)
TGCGGGACAAAATCGCCTCGCTGTA
NONE
OsAffx.21533.1.S1_at--320--44319Chr09:16048015..16048039 (25 bp)
GCCATGGGACCTATATTGCACCGGT
NONE
OsAffx.21533.1.S1_at--116--5091Chr01:30373508..30373532 (25 bp)
GCACCGGTTTTTGATAATTGAGAGA
NONE
OsAffx.21533.1.S1_at--570--4071Chr01:30372416..30372440 (25 bp)
CGAGTATGCAGGTCGGTTTGAACAT
NONE
OsAffx.21533.1.S1_at--668--6931Chr01:30372345..30372369 (25 bp)
GTAGGGATGCACAGCAACGGCCAAA
NONE
OsAffx.21533.1.S1_at--404--5311Chr01:30372317..30372341 (25 bp)
GAAGGATGATCATGCCGACTGTCAC
NONE
OsAffx.21533.1.S1_at--539--4091Chr01:30372302..30372326 (25 bp)
CGACTGTCACCAAGAGCCTACAACA
NONE
Target Sequence 
AGATGTTCTGACATGTAGGACCCATGTTGACTCAACGCTGATGACTTGGGTCAAATTGCGATGCGGGACAAAATCGCCTC
GCTGTACTGCCATGGGACCTATATTGCACCGGTTTTTGATAATTGAGAGACCCGTTGTATTTGACGACGAGTATGCAGGT
CGGTTTGAACATTTGGAAGGAAATGGAAGAAACAGGCGAGGTTTGCAAAACGAGGTAGGTAGGGATGCACAGCAACGGCC
AAAACAGAAGGATGATCATGCCGACTGTCACCAAGAGCCTACAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis