Browse Element(s) Details


OsAffx.21539.1.S1_x_at

Description gb:NM_191765.1
DB_XREF= gi:34910613
GEN=P0683B11.16
TID=OsAffx.21539.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0683B11.16 (P0683B11.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g519302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51890Os.11023.1.S2_a_at11/111+30157112..30163085inositol polyphosphate 5-phosphatase, putative, expressed
LOC_Os01g51890Os.11023.1.S1_a_at11/111+30157112..30163085inositol polyphosphate 5-phosphatase, putative, expressed
LOC_Os01g51904Os.50521.1.S1_at2/111+30166253..30168706hypothetical protein
LOC_Os01g51920Os.13835.2.S2_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51920Os.13835.2.S3_a_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51920Os.13835.2.S1_a_at11/111+30169688..30173672Choline/ethanolamine kinase family protein, expressed
LOC_Os01g51930OsAffx.23756.1.S1_at10/111+30179099..30179906hypothetical protein
LOC_Os01g51930OsAffx.21539.1.S1_x_at2/111+30179099..30179906hypothetical protein
LOC_Os01g51940OsAffx.11568.2.S1_at11/111+30181508..30182541hypothetical protein
LOC_Os01g51950Os.46012.2.S1_x_at7/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51950Os.46012.3.S1_x_at5/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51950Os.27088.1.A1_x_at4/111+30187693..30193271retrotransposon protein, putative, unclassified
LOC_Os01g51960OsAffx.11569.1.S1_at11/111+30195755..30196102hypothetical protein
LOC_Os01g51970OsAffx.23757.1.S1_at8/111+30198011..30200500hypothetical protein
LOC_Os01g51980Os.14115.1.S1_at11/111+30201333..30204331Allinase, C-terminal domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21539.1.S1_x_at--503--4071Chr01:30179143..30179167 (25 bp)
CGAGGGTGACGACGGCCAGCGCAGG
LOC_Os01g51930
OsAffx.21539.1.S1_x_at--385--1631Chr01:30179216..30179240 (25 bp)
AGCGGCAGCGAGTGGCCTAGCACAA
LOC_Os01g51930
OsAffx.21539.1.S1_x_at--332--1091NONE
AGTGGCCTAGCACAAGTGTGAAGCA
NONE
OsAffx.21539.1.S1_x_at--332--3711NONE
CTAGCACAAGTGTGAAGCAGCAGCA
NONE
OsAffx.21539.1.S1_x_at--695--2871Chr01:30181007..30181031 (25 bp)
AAGGGAAGAGGCATTCCCGGCCTAT
NONE
OsAffx.21539.1.S1_x_at--836--8191Chr01:30181010..30181034 (25 bp)
GGAAGAGGCATTCCCGGCCTATGTT
NONE
OsAffx.21539.1.S1_x_at--741--8271Chr01:30181016..30181040 (25 bp)
GGCATTCCCGGCCTATGTTGACGGC
NONE
OsAffx.21539.1.S1_x_at--885--11Chr01:30181019..30181043 (25 bp)
ATTCCCGGCCTATGTTGACGGCTTT
NONE
OsAffx.21539.1.S1_x_at--1099--10111Chr01:30181029..30181053 (25 bp)
TATGTTGACGGCTTTCCCTGCAACA
NONE
OsAffx.21539.1.S1_x_at--768--8811Chr01:30181031..30181055 (25 bp)
TGTTGACGGCTTTCCCTGCAACAAG
NONE
OsAffx.21539.1.S1_x_at--563--5731Chr01:30181035..30181059 (25 bp)
GACGGCTTTCCCTGCAACAAGCCAA
NONE
Target Sequence 
CGAGGGTGACGACGGCCAGCGCAGGGGCATCGGCGCCCTAGCGCGGGGCGAAGGCGGCGGCCCGCACGGGGGCAGCGGCA
GCGAGTGGCCTAGCACAAGTGTGAAGCAGCAGCAAAGGGAAGAGGCATTCCCGGCCTATGTTGACGGCTTTCCCTGCAAC
AAGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21539.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis