Browse Element(s) Details


OsAffx.21569.1.S1_at

Description gb:NM_191563.1
DB_XREF= gi:34910209
GEN=B1060H01.19
TID=OsAffx.21569.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1060H01.19 (B1060H01.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g534089/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53350Os.10597.1.S1_at11/111+30982154..30984015UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53360NANA1+30984255..30984728hypothetical protein
LOC_Os01g53370Os.31669.1.S1_x_at10/111+30993490..30995132Anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
LOC_Os01g53370Os.31669.1.S1_at9/111+30993490..30995132Anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
LOC_Os01g53380Os.31669.1.S1_at5/111+30998380..30998841Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os01g53380Os.31669.1.S1_x_at3/111+30998380..30998841Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os01g53390Os.17437.1.S1_at11/111+31002321..31004269Anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
LOC_Os01g53390Os.31669.1.S1_x_at1/111+31002321..31004269Anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
LOC_Os01g53399NANA1+31004624..31004914NA
LOC_Os01g53408OsAffx.21569.1.S1_at9/111+31005568..31006121NA
LOC_Os01g53420Os.5225.1.S1_at11/111+31016698..31018300UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g53430Os.33722.1.S1_at11/111+31021784..31023538UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21569.1.S1_at--240--3711Chr01:31007149..31007173 (25 bp)
CTAGCTAGTATACTGGTACATAAGA
NONE
OsAffx.21569.1.S1_at--418--2031NONE
ACTATCAGTTTCGTATTGCAGACAT
NONE
OsAffx.21569.1.S1_at--143--6851Chr01:31005861..31005881 (21 bp)
GTTTCGTATTGCAGACATCATGGCG
LOC_Os01g53408
OsAffx.21569.1.S1_at--110--2091Chr01:31005847..31005871 (25 bp)
ACATCATGGCGAAAGGTGGGTTAGT
LOC_Os01g53408
OsAffx.21569.1.S1_at--348--1251Chr01:31005825..31005849 (25 bp)
AGTTGTACCGGCAAAGGCATCTTGT
LOC_Os01g53408
OsAffx.21569.1.S1_at--173--3291Chr01:31005814..31005838 (25 bp)
CAAAGGCATCTTGTGGGCGTTGCGA
LOC_Os01g53408
OsAffx.21569.1.S1_at--758--4631Chr01:31005798..31005822 (25 bp)
GCGTTGCGAGATGAGCAATTGCCGA
LOC_Os01g53408
OsAffx.21569.1.S1_at--893--5191Chr01:31005784..31005808 (25 bp)
GCAATTGCCGAGTTGACGATGCAAA
LOC_Os01g53408
OsAffx.21569.1.S1_at--932--2711Chr01:31005758..31005782 (25 bp)
AAGCATGAACATACGCTGCTCATTG
LOC_Os01g53408
OsAffx.21569.1.S1_at--642--5491Chr01:31005752..31005776 (25 bp)
GAACATACGCTGCTCATTGCCAAGG
LOC_Os01g53408
OsAffx.21569.1.S1_at--280--3211Chr01:31005732..31005756 (25 bp)
CAAGGACCAACTTGGTCAGGTTGTT
LOC_Os01g53408
Target Sequence 
CTAGCTAGTATACTGGTACATAAGAGTACAAACTACTACTATTACTATTACTATCAGTTTCGTATTGCAGACATCATGGC
GAAAGGTGGGTTAGTTGTACCGGCAAAGGCATCTTGTGGGCGTTGCGAGATGAGCAATTGCCGAGTTGACGATGCAAACA
AGCATGAACATACGCTGCTCATTGCCAAGGACCAACTTGGTCAGGTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21569.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis