Browse Element(s) Details


OsAffx.21647.1.S1_at

Description tigr:9629.m05918
TID=OsAffx.21647.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6025011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60210NANA1+35149827..35150159transposon protein, putative, unclassified
LOC_Os01g60220NANA1+35150794..35156949transposon protein, putative, unclassified
LOC_Os01g60230Os.38376.2.S1_at11/111+35161430..35166673auxin efflux carrier family protein, putative, expressed
LOC_Os01g60230Os.38376.1.S1_s_at11/111+35161430..35166673auxin efflux carrier family protein, putative, expressed
LOC_Os01g60230Os.38376.1.S1_at9/111+35161430..35166673auxin efflux carrier family protein, putative, expressed
LOC_Os01g60250OsAffx.21647.1.S1_at11/111+35170523..35172361pentatricopeptide, putative
LOC_Os01g60260Os.14790.1.S1_at10/111+35179157..35182769KH domain-containing protein, putative, expressed
LOC_Os01g60270Os.24893.1.S1_a_at11/111+35189336..35192977WUSCHEL-related homeobox 14, putative, expressed
LOC_Os01g60280Os.34757.1.S1_at11/111+35195255..35206298Protein kinase domain containing protein, expressed
LOC_Os01g60280OsAffx.980.1.S1_at11/111+35195255..35206298Protein kinase domain containing protein, expressed
LOC_Os01g60280Os.52345.1.S1_at10/111+35195255..35206298Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21647.1.S1_at--1015--4431Chr01:35171070..35171094 (25 bp)
GCCATTCCGGGCTTGTTGAAGAAGG
LOC_Os01g60250
OsAffx.21647.1.S1_at--1139--1311Chr01:35171021..35171045 (25 bp)
AGAGGAATTTTCTTTGGAGCCACAG
LOC_Os01g60250
OsAffx.21647.1.S1_at--116--5871Chr01:35171005..35171029 (25 bp)
GAGCCACAGTTAGAGCACTACGCAT
LOC_Os01g60250
OsAffx.21647.1.S1_at--200--6791Chr01:35170997..35171021 (25 bp)
GTTAGAGCACTACGCATGTGTGACT
LOC_Os01g60250
OsAffx.21647.1.S1_at--680--4931Chr01:35170897..35170921 (25 bp)
GCTTGGAGGACATACCTTGCAGCAT
LOC_Os01g60250
OsAffx.21647.1.S1_at--809--1351Chr01:35170851..35170875 (25 bp)
AGAGAGCCCAAGAGGCAGCTAGGAT
LOC_Os01g60250
OsAffx.21647.1.S1_at--172--7791Chr01:35170790..35170814 (25 bp)
GGTGCTGCTAGCGAATACATATGGC
LOC_Os01g60250
OsAffx.21647.1.S1_at--351--4711Chr01:35170767..35170791 (25 bp)
GCTGGGAGGGAAACTTTGACGAACT
LOC_Os01g60250
OsAffx.21647.1.S1_at--173--5631Chr01:35170611..35170635 (25 bp)
GACACCCTGAGGCTGACATGATCTA
LOC_Os01g60250
OsAffx.21647.1.S1_at--77--5591Chr01:35170585..35170609 (25 bp)
GAAATGTTACATGCGCTGATAAGTT
LOC_Os01g60250
OsAffx.21647.1.S1_at--459--8891Chr01:35170557..35170581 (25 bp)
TGAGGGATTGCAGCCACCTGAGTAA
LOC_Os01g60250
Target Sequence 
GCCATTCCGGGCTTGTTGAAGAAGGGAAGAATTTTCTGAAGAGAATGAAAGAGGAATTTTCTTTGGAGCCACAGTTAGAG
CACTACGCATGTGTGACTGACATGCTTGGGCGTGCAGGGAGGCTGGAGGAGGCTAGAAAGGTAGTAGAGGATGCAGGGGA
TGTGGGGGTTGGTGCTTGGAGGACATACCTTGCAGCATGCCGGATGCATGGTGATAAGGAGAGAGCCCAAGAGGCAGCTA
GGATGCTGATGACGACAGAGCAGTCTGAGAGTGGTGGGTGGGTGCTGCTAGCGAATACATATGGCTGGGAGGGAAACTTT
GACGAACTGGAAGAGGTGAGGGGCGAGATGAAACGGCGAGGAGTACAGAAAGCTGCACCAGGCTGCAGCTGGGTTGAGGT
GGGTGGAGATGATAGGGGGAGTGGAGCAGTGATGCATGCTTTTGTCAGTGGGGATAGGGGACACCCTGAGGCTGACATGA
TCTACGAAATGTTACATGCGCTGATAAGTTGGATGAGGGATTGCAGCCACCTGAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis