Browse Element(s) Details


OsAffx.21659.1.S1_at

Description gb:NM_191041.1
DB_XREF= gi:34909165
GEN=P0468B07.26
TID=OsAffx.21659.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0468B07.26 (P0468B07.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g595892/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59560OsAffx.985.3.S1_x_at11/111+34764111..34771226Protein kinase domain containing protein, expressed
LOC_Os01g59560OsAffx.985.7.S1_x_at2/111+34764111..34771226Protein kinase domain containing protein, expressed
LOC_Os01g59570Os.18744.1.S1_at11/111+34772599..34780847Protein kinase domain containing protein, expressed
LOC_Os01g59570OsAffx.985.1.S1_x_at1/111+34772599..34780847Protein kinase domain containing protein, expressed
LOC_Os01g59570Os.53116.1.S1_at1/111+34772599..34780847Protein kinase domain containing protein, expressed
LOC_Os01g59580OsAffx.985.1.S1_x_at11/111+34785572..34792859Protein kinase domain containing protein
LOC_Os01g59589OsAffx.21659.1.S1_at2/111+34794308..34794507NA
LOC_Os01g59600Os.3706.1.S1_at11/111+34797869..34802345Proteasome subunit alpha type 3, putative, expressed
LOC_Os01g59610NANA1+34803170..34803795serine protease inhibitor, Kazal-type family protein, putative, expressed
LOC_Os01g59620Os.35901.1.S1_at10/111+34807419..34811830YDG/SRA domain containing protein, expressed
LOC_Os01g59630Os.23590.1.A1_at10/111+34812128..34816646Exostosin family protein, expressed
LOC_Os01g59640OsAffx.9467.1.S1_at11/111+34817654..34819545No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21659.1.S1_at--935--4691Chr01:34794178..34794202 (25 bp)
GCGGCTTCCTCCTAGATCTGGTGGA
NONE
OsAffx.21659.1.S1_at--444--8631Chr01:34794404..34794428 (25 bp)
TGGGTGGATACGACGCCTACGAAGA
LOC_Os01g59589
OsAffx.21659.1.S1_at--159--9951Chr01:34794412..34794433 (22 bp)
TACGACGCCTACGAAGATAGAGACG
LOC_Os01g59589
OsAffx.21659.1.S1_at--81--6491Chr01:34794427..34794593 (25 bp)
GATAGAGACGTGCACTGTTTGCGTT
NONE
OsAffx.21659.1.S1_at--953--5151Chr01:34794646..34794670 (25 bp)
GCAACGACATGGTCGATTATCCTAT
NONE
OsAffx.21659.1.S1_at--1008--6491Chr01:34794674..34794698 (25 bp)
GATATGAGCATCAGCGGCAGGAGAC
NONE
OsAffx.21659.1.S1_at--602--3331Chr01:34794699..34794723 (25 bp)
CACGGGATGCAAGTCTCAGATTGGT
NONE
OsAffx.21659.1.S1_at--37--2851Chr01:34794709..34794733 (25 bp)
AAGTCTCAGATTGGTTTTAATTCGA
NONE
OsAffx.21659.1.S1_at--470--8151Chr01:34794734..34794758 (25 bp)
GGAAATCTTCAGAGATCATCGCTGT
NONE
OsAffx.21659.1.S1_at--930--411Chr01:34794748..34794772 (25 bp)
ATCATCGCTGTTAGTTCGTTACCGC
NONE
OsAffx.21659.1.S1_at--112--6711Chr01:34794775..34794799 (25 bp)
GTTCGGTACGGATTTGTTCGTCGAT
NONE
Target Sequence 
GCGGCTTCCTCCTAGATCTGGTGGAGGCGACGGCAGCTCCAGACGGTGGCAGCGTGGCTCCAGGCGATGGCGGTTCCCGG
TGGCGGATCCACTCCCTCTCTCCTAGATCTGGACGGAGAGGGGAGGGGCGATGGCGGTGGTGGGGGCGGAGGTGGGTGGG
TGGATACGACGCCTACGAAGATAGAGACGTGCACTGTTTGCGTTTTGTGTTTGGTCGCATGTCGAATTCTGACAAAAACA
ACCGCGGGCCGGCATGGCAACGACATGGTCGATTATCCTATGGGGATATGAGCATCAGCGGCAGGAGACCACGGGATGCA
AGTCTCAGATTGGTTTTAATTCGAGGAAATCTTCAGAGATCATCGCTGTTAGTTCGTTACCGCGGGTTCGGTACGGATTT
GTTCGTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis