Browse Element(s) Details


OsAffx.21682.1.S1_at

Description gb:NM_190929.1
DB_XREF= gi:34908941
GEN=P0691E06.23
TID=OsAffx.21682.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0691E06.23 (P0691E06.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5865011/11Protease inhibitor/seed storage/LTP family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58600Os.22639.1.S1_at4/111+34208929..34209138hypothetical protein
LOC_Os01g58610OsAffx.11650.1.S1_at11/111+34211768..34214261Phosphoglycerate kinase, chloroplast precursor, putative, expressed
LOC_Os01g58620Os.7800.1.S1_at11/111+34216946..34218575expressed protein
LOC_Os01g58630Os.36426.1.S1_at11/111+34220608..34222844pentatricopeptide, putative, expressed
LOC_Os01g58640Os.11682.1.S1_at11/111+34224228..34231210Ser/Thr protein phosphatase family protein, expressed
LOC_Os01g58650OsAffx.21682.1.S1_at11/111+34233218..34236440Protease inhibitor/seed storage/LTP family protein
LOC_Os01g58660Os.16752.1.S1_at11/111+34238146..34238836expressed protein
LOC_Os01g58670Os.55436.1.S1_at11/111+34241055..34245283hypothetical protein
LOC_Os01g58670Os.16744.1.S1_at7/111+34241055..34245283hypothetical protein
LOC_Os01g58680Os.33192.1.S1_at10/111+34246333..34251495Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58680OsAffx.30558.1.S1_at1/111+34246333..34251495Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58690Os.8907.1.S1_at11/111+34253409..34256653Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58700Os.20248.1.S1_at11/111+34257080..34259790expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21682.1.S1_at--1160--8411Chr01:34233354..34233378 (25 bp)
TGGCCAACTGCCAGGACTACGTGAT
LOC_Os01g58650
OsAffx.21682.1.S1_at--397--951Chr01:34233366..34233390 (25 bp)
AGGACTACGTGATGTTCCCGGCCGA
LOC_Os01g58650
OsAffx.21682.1.S1_at--1092--8791Chr01:34233378..34233402 (25 bp)
TGTTCCCGGCCGACCCGAAGATCGA
LOC_Os01g58650
OsAffx.21682.1.S1_at--168--2811Chr01:34233395..34233419 (25 bp)
AAGATCGACCCGTCGCAGGCTTGCT
LOC_Os01g58650
OsAffx.21682.1.S1_at--849--4551Chr01:34233420..34233444 (25 bp)
GCGCGGCGGTCCAGAGGGCAAACAT
LOC_Os01g58650
OsAffx.21682.1.S1_at--618--8231Chr01:34233436..34233460 (25 bp)
GGCAAACATGCCGTGCGTGTGCAAC
LOC_Os01g58650
OsAffx.21682.1.S1_at--1100--3991Chr01:34233447..34233471 (25 bp)
CGTGCGTGTGCAACAAGGTCATCCC
LOC_Os01g58650
OsAffx.21682.1.S1_at--24--7231Chr01:34233476..34233500 (25 bp)
GTCGAGCAGCTGATTTGCATGGACA
LOC_Os01g58650
OsAffx.21682.1.S1_at--1157--5591Chr01:34233497..34233521 (25 bp)
GACAAGGTTGTGTACGTCGTCGCCT
LOC_Os01g58650
OsAffx.21682.1.S1_at--143--4451Chr01:34233518..34233542 (25 bp)
GCCTTCTGCAAGAAGCCCTTTCAGC
LOC_Os01g58650
OsAffx.21682.1.S1_at--1084--10311Chr01:34233536..34233560 (25 bp)
TTTCAGCCTGGCTCCAACTGTGGAA
LOC_Os01g58650
Target Sequence 
TGGCCAACTGCCAGGACTACGTGATGTTCCCGGCCGACCCGAAGATCGACCCGTCGCAGGCTTGCTGCGCGGCGGTCCAG
AGGGCAAACATGCCGTGCGTGTGCAACAAGGTCATCCCGGAGGTCGAGCAGCTGATTTGCATGGACAAGGTTGTGTACGT
CGTCGCCTTCTGCAAGAAGCCCTTTCAGCCTGGCTCCAACTGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis