Browse Element(s) Details


OsAffx.21756.2.S1_x_at

Description gb:NM_192543.1
DB_XREF= gi:34912169
GEN=P0700A11.11
TID=OsAffx.21756.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0700A11.11 (P0700A11.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g313003/11transposon protein, putative, unclassified
LOC_Os01g547402/11transposon protein, putative, unclassified
LOC_Os05g489101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g351201/11transposon protein, putative, unclassified, expressed
LOC_Os03g582201/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31270OsAffx.14067.1.S1_at11/114+18515321..18520273ribosome-associated GTPase YjeQ family protein, expressed
LOC_Os04g31270Os.18054.1.S1_s_at11/114+18515321..18520273ribosome-associated GTPase YjeQ family protein, expressed
LOC_Os04g31290OsAffx.14069.1.S1_x_at10/114+18533150..18535080Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g31290OsAffx.14069.1.S1_at9/114+18533150..18535080Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g31300OsAffx.21756.2.S1_x_at3/114+18540647..18543504transposon protein, putative, unclassified
LOC_Os04g31300OsAffx.21756.3.S1_x_at2/114+18540647..18543504transposon protein, putative, unclassified
LOC_Os04g31310OsAffx.3964.1.S1_at11/114+18545156..18546752hypothetical protein
LOC_Os04g31320Os.6614.1.S1_at11/114+18548072..18550666SWIB/MDM2 domain containing protein, expressed
LOC_Os04g31330Os.9240.1.S1_at11/114+18553235..18555852Exo70 exocyst complex subunit family protein, expressed
LOC_Os04g31340Os.14139.1.S1_at11/114+18559522..18564663SNF1-related protein kinase regulatory gamma subunit 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21756.2.S1_x_at--699--8411NONE
GGCCCTGGCCGTTGGAGTCGAAATC
NONE
OsAffx.21756.2.S1_x_at--828--8451Chr01:8979358..8979377 (20 bp)
TGGCCGTTGGAGTCGAAATCCCCAA
NONE
OsAffx.21756.2.S1_x_at--1158--3915Chr10:10104038..10104058 (21 bp)
CTGGCCGGTCTGATCGCAGTGAAGC
NONE
OsAffx.21756.2.S1_x_at--43--3871Chr01:23177715..23177739 (25 bp)
CTGATCGCAGTGAAGCGGCCGGTCA
NONE
OsAffx.21756.2.S1_x_at--621--1693Chr04:18543199..18543235 (25 bp)
ACCAGTAGGGCCAGTCAGACCGGCC
LOC_Os04g31300
OsAffx.21756.2.S1_x_at--313--4133Chr08:19911178..19911202 (25 bp)
CGCAGGTCACTTTTCAACACAACCA
NONE
OsAffx.21756.2.S1_x_at--192--7734Chr08:19911184..19911208 (25 bp)
TCACTTTTCAACACAACCAACCGTT
NONE
OsAffx.21756.2.S1_x_at--224--27124Chr09:1516067..1516090 (24 bp)
AAGCTTATTCAAAGGGCTATCCAAC
NONE
OsAffx.21756.2.S1_x_at--211--4871Chr01:23178033..23178057 (25 bp)
GCTATCCAACCCATTAACAATCCAT
NONE
OsAffx.21756.2.S1_x_at--904--55321Chr09:1516111..1516135 (25 bp)
GAAACACAACTTTTCTCAGGGAGAA
NONE
OsAffx.21756.2.S1_x_at--981--2155Chr04:18543467..18543491 (25 bp)
ACACTCCAAAGGATACTCCACCAGA
LOC_Os04g31300
Target Sequence 
GGCCCTGGCCGTTGGAGTCGAAATCCCCAACTCTGTGCTCTGCCAGTCAGACCGCCATAGAGTGGACGGTCAGACCGGAC
TACTTTGTAACGGCTAGAAAACTAGCAGTTACAGGGCAATCATTGAGCCCACTCAACCTGGCCGGTCTGATCGCAGTGAA
GCGGCCGGTCAGACCGTCCACGGCTGGGTCAGACCGCCATCGGCTCGGTCTGACCGGTTGCGGCTCTGGCGGCTCTGTAT
CGCCACCAAAAACCAGACCAGTGCAACAGACCAGTAGGGCCAGTCAGACCGGCCTTACCACGCCGGTCAGACCGGCTAAC
AGCCCCGGTCAGACCGACCTAAGGCCCACGGTCAGACCGCAGGTCACTTTTCAACACAACCAACCGTTAGTAAAACGGCG
ATATCTCTTGACTCGGATCTCGGAATTTGGCGTTCTCGGACTCTATGGAAAGCTTATTCAAAGGGCTATCCAACCCATTA
ACAATCCATCCAAGAAACACAACTTTTCTCAGGGAGAAATGACTCACACTCCAAAGGATACTCCACCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21756.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis