Browse Element(s) Details


OsAffx.2177.1.S1_at

Description tigr:9629.m03553
TID=OsAffx.2177.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3753011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37460Os.28649.1.S1_at11/111+21262636..21264288Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os01g37470Os.52498.1.S1_at11/111+21265187..21268127expressed protein
LOC_Os01g37480Os.23997.1.S1_at11/111+21269150..21272577expressed protein
LOC_Os01g37480Os.57362.1.S1_at2/111+21269150..21272577expressed protein
LOC_Os01g37490Os.18566.1.S1_at11/111+21277260..21278788dynein light chain, putative, expressed
LOC_Os01g37500OsAffx.23542.1.S1_at10/111+21278933..21280143hypothetical protein
LOC_Os01g37510Os.14593.1.S1_at11/111+21280808..21282357Peptide deformylase, mitochondrial precursor, putative, expressed
LOC_Os01g37520OsAffx.8983.2.S1_at11/111+21284258..21284866hypothetical protein
LOC_Os01g37530OsAffx.2177.1.S1_at11/111+21287471..21287716hypothetical protein
LOC_Os01g37530OsAffx.31891.1.S1_x_at1/111+21287471..21287716hypothetical protein
LOC_Os01g37540NANA1+21291447..21297602transposon protein, putative, unclassified
LOC_Os01g37550NANA1+21298234..21301476transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2177.1.S1_at--158--3091Chr01:21287501..21287525 (25 bp)
GAAGTTAACAGGAGGGCGTCGGGCG
LOC_Os01g37530
OsAffx.2177.1.S1_at--924--5011Chr01:21287532..21287556 (25 bp)
GCAGGGAAGCAGAAGACCGCGTTTT
LOC_Os01g37530
OsAffx.2177.1.S1_at--231--8191Chr01:21287536..21287560 (25 bp)
GGAAGCAGAAGACCGCGTTTTCTTT
LOC_Os01g37530
OsAffx.2177.1.S1_at--1001--3411Chr01:21287541..21287565 (25 bp)
CAGAAGACCGCGTTTTCTTTTTGAT
LOC_Os01g37530
OsAffx.2177.1.S1_at--301--10031Chr01:21287565..21287589 (25 bp)
TAGACAGAATGACTCAACGCGATGG
LOC_Os01g37530
OsAffx.2177.1.S1_at--179--1551Chr01:21287604..21287628 (25 bp)
AGCATTACATGCATAGGCCTCTATC
LOC_Os01g37530
OsAffx.2177.1.S1_at--872--9051Chr01:21287613..21287637 (25 bp)
TGCATAGGCCTCTATCTTCCATACT
LOC_Os01g37530
OsAffx.2177.1.S1_at--948--10654Chr10:13320831..13320855 (25 bp)
TTCCATACTCACTCTACCGATTTAT
NONE
OsAffx.2177.1.S1_at--325--334Chr10:13320835..13320859 (25 bp)
ATACTCACTCTACCGATTTATGGAA
NONE
OsAffx.2177.1.S1_at--1129--9951Chr01:21287643..21287667 (25 bp)
TACCGATTTATGGAAACATGACCGG
LOC_Os01g37530
OsAffx.2177.1.S1_at--262--2111Chr01:21287658..21287682 (25 bp)
ACATGACCGGAAACCATGATCGGGA
LOC_Os01g37530
Target Sequence 
GAAGTTAACAGGAGGGCGTCGGGCGGCGGACGCAGGGAAGCAGAAGACCGCGTTTTCTTTTTGATAGACAGAATGACTCA
ACGCGATGGTGTATTGATCATGGAGCATTACATGCATAGGCCTCTATCTTCCATACTCACTCTACCGATTTATGGAAACA
TGACCGGAAACCATGATCGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis