Browse Element(s) Details


OsAffx.2182.1.S1_at

Description tigr:9629.m03601
TID=OsAffx.2182.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3797011/11hypothetical protein
LOC_Os07g356301/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g234941/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37930NANA1+21573756..21577061retrotransposon protein, putative, unclassified
LOC_Os01g37940NANA1+21577664..21583819retrotransposon protein, putative, unclassified
LOC_Os01g37950Os.6768.1.S1_at9/111+21588744..21589239expressed protein
LOC_Os01g37960Os.11353.1.S1_at11/111+21592497..21597668IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os01g37970OsAffx.2182.1.S1_at11/111+21600076..21600698hypothetical protein
LOC_Os01g37980Os.15638.1.S1_at10/111+21602465..21605661Vesicle transport v-SNARE 13, putative, expressed
LOC_Os01g37990OsAffx.693.2.S1_at11/111+21609490..21611695hypothetical protein
LOC_Os01g37990Os.15638.1.S1_at1/111+21609490..21611695hypothetical protein
LOC_Os01g38000OsAffx.8974.2.A1_at11/111+21612929..21613468hypothetical protein
LOC_Os01g38010NANA1+21620195..21621544retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38020Os.47983.1.A1_at1/111+21622623..21623379retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2182.1.S1_at--208--2471Chr01:21600106..21600130 (25 bp)
AACAACTCTGCCAGCGACGACTTCT
LOC_Os01g37970
OsAffx.2182.1.S1_at--1025--3371Chr01:21600185..21600209 (25 bp)
CAGCCTCCCGGCTAGGGCTGTCAAA
LOC_Os01g37970
OsAffx.2182.1.S1_at--29--4099Chr10:16013220..16013239 (20 bp)
CGAGCTTTGTCGAGCCGAGCTCAAG
NONE
OsAffx.2182.1.S1_at--575--5911Chr01:21600241..21600265 (25 bp)
GAGCTCAAGCTACCAACGAGCCTAG
LOC_Os01g37970
OsAffx.2182.1.S1_at--799--25910Chr06:20022958..20023235 (25 bp)
AACGAGCCTAGCTCGGCTCGAGCTT
NONE
OsAffx.2182.1.S1_at--149--87713Chr12:7468114..7468137 (23 bp)
TGTATCGAGCTCGAGCCAGGCAGAC
NONE
OsAffx.2182.1.S1_at--257--26911Chr12:21580873..21580895 (23 bp)
AAGCTCGGCTCGTTGACAACCCTAC
NONE
OsAffx.2182.1.S1_at--1043--5591Chr01:21600558..21600582 (25 bp)
GACAACCCTACTCCTGGCGGTGGAA
LOC_Os01g37970
OsAffx.2182.1.S1_at--355--7731Chr01:21600576..21600600 (25 bp)
GGTGGAACTCCCGAGGATCAGCCAT
LOC_Os01g37970
OsAffx.2182.1.S1_at--21--1011Chr01:21600589..21600613 (25 bp)
AGGATCAGCCATTTGAGCGCCACGG
LOC_Os01g37970
OsAffx.2182.1.S1_at--171--3931Chr01:21600641..21600665 (25 bp)
CGGCCGCATCCATGGTTGTGTGTGT
LOC_Os01g37970
Target Sequence 
AACAACTCTGCCAGCGACGACTTCTACAGCTGCGGGGAGGCAAGCCCGTGCTCCCTGGCGGCATCTGCGCCCTCTTGCCC
AGCCTCCCGGCTAGGGCTGTCAAAAAAGCTCGAGGCTCGCGAGCTTTGTCGAGCCGAGCTCAAGCTACCAACGAGCCTAG
CTCGGCTCGAGCTTGTATCGAGCTCGAGCCAGGCAGACGAGCTTGCTCAAGCTCGGCTCGTTGACAACCCTACTCCTGGC
GGTGGAACTCCCGAGGATCAGCCATTTGAGCGCCACGGCGGCAGCCGCGGCGAGGAGGAGCAGCGCGGCCGCATCCATGG
TTGTGTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis