Browse Element(s) Details


OsAffx.2189.1.S1_at

Description tigr:9629.m03700
TID=OsAffx.2189.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3894011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38920NANA1+22178457..22179331retrotransposon protein, putative, unclassified
LOC_Os01g38930OsAffx.14826.2.S1_at1/111+22196795..22198314hypothetical protein
LOC_Os01g38940OsAffx.2189.1.S1_at11/111+22202972..22203438hypothetical protein
LOC_Os01g38950Os.12864.1.S1_a_at11/111+22205837..22210876Casein kinase I, delta isoform, putative, expressed
LOC_Os01g38950Os.12864.4.S1_x_at11/111+22205837..22210876Casein kinase I, delta isoform, putative, expressed
LOC_Os01g38960OsAffx.11382.1.S1_at11/111+22213746..22214687expressed protein
LOC_Os01g38970Os.48825.1.S1_at10/111+22219635..22224767Carbamoyl-phosphate synthase large chain, putative, expressed
LOC_Os01g38980Os.5356.1.S1_at11/111+22226897..22229950calmodulin-binding family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2189.1.S1_at--1028--2451Chr01:22203014..22203038 (25 bp)
AACAACTCTCAGAAGCCAAGTGGGA
LOC_Os01g38940
OsAffx.2189.1.S1_at--108--1491Chr01:22203042..22203066 (25 bp)
AGCAAGATAGTTCAGGCTCTCAAAC
LOC_Os01g38940
OsAffx.2189.1.S1_at--254--4811Chr01:22203057..22203081 (25 bp)
GCTCTCAAACTAAAGATGCCCCTTT
LOC_Os01g38940
OsAffx.2189.1.S1_at--285--2791Chr01:22203069..22203093 (25 bp)
AAGATGCCCCTTTTAAGACTCCACA
LOC_Os01g38940
OsAffx.2189.1.S1_at--489--10491Chr01:22203081..22203105 (25 bp)
TTAAGACTCCACACTGCCCTTTCTG
LOC_Os01g38940
OsAffx.2189.1.S1_at--119--4551Chr01:22203096..22203120 (25 bp)
GCCCTTTCTGCGAGGTAGATGGATA
LOC_Os01g38940
OsAffx.2189.1.S1_at--186--71Chr01:22203132..22203156 (25 bp)
ATTGCTCATGTTTCAAAGTGTGGTT
LOC_Os01g38940
OsAffx.2189.1.S1_at--1119--6111Chr01:22203332..22203356 (25 bp)
GAGTGGCTGACAAACTAGCCAAGGA
LOC_Os01g38940
OsAffx.2189.1.S1_at--1129--1551Chr01:22203357..22203381 (25 bp)
AGCTATAATGCCTAGAAGTGTTCAT
LOC_Os01g38940
OsAffx.2189.1.S1_at--788--1111Chr01:22203373..22203397 (25 bp)
AGTGTTCATTCAATGTGTGCTTGTC
LOC_Os01g38940
OsAffx.2189.1.S1_at--150--2991Chr01:22203384..22203408 (25 bp)
AATGTGTGCTTGTCAAAACCGCATC
LOC_Os01g38940
Target Sequence 
AACAACTCTCAGAAGCCAAGTGGGAGTAAGCAAGATAGTTCAGGCTCTCAAACTAAAGATGCCCCTTTTAAGACTCCACA
CTGCCCTTTCTGCGAGGTAGATGGATATTGGCAAAGGAATTGCTCATGTTTCAAAGTGTGGTTAGCTAAGAAAGGGATTC
AATACCGTTTAGAAAGTAGCAAAAGAGGAGCAAAGCCTAACAGAGTGGCTGACAAACTAGCCAAGGAAGCTATAATGCCT
AGAAGTGTTCATTCAATGTGTGCTTGTCAAAACCGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis