Browse Element(s) Details


OsAffx.2202.1.S1_x_at

Description tigr:9629.m03910
TID=OsAffx.2202.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g409407/11hypothetical protein
LOC_Os01g408805/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40910Os.14919.1.S1_at6/111+23464332..23469497SWIM zinc finger family protein
LOC_Os01g40910Os.56216.1.S1_at2/111+23464332..23469497SWIM zinc finger family protein
LOC_Os01g40920OsAffx.23614.1.S1_at11/111+23472036..23474468hypothetical protein
LOC_Os01g40930OsAffx.11414.2.S1_x_at10/111+23480008..23483169hypothetical protein
LOC_Os01g40930OsAffx.11414.1.S1_at9/111+23480008..23483169hypothetical protein
LOC_Os01g40940OsAffx.2202.1.S1_x_at7/111+23489187..23490342hypothetical protein
LOC_Os01g40940Os.57295.1.S1_at1/111+23489187..23490342hypothetical protein
LOC_Os01g40950Os.57295.1.S1_at8/111+23494454..23495173hypothetical protein
LOC_Os01g40960OsAffx.23615.2.S1_s_at11/111+23498111..23498734MtN3/saliva family protein
LOC_Os01g40970OsAffx.11415.1.S1_at11/111+23500488..23501228uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os01g40980Os.33016.2.S1_x_at11/111+23501728..23513824DNA repair helicase family protein, expressed
LOC_Os01g40980Os.33016.3.S1_x_at10/111+23501728..23513824DNA repair helicase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2202.1.S1_x_at--236--9632Chr01:23490263..23490287 (25 bp)
TCATGCAGCTGTCCATGGCGCAAGG
LOC_Os01g40940
OsAffx.2202.1.S1_x_at--356--3532Chr01:23490262..23490286 (25 bp)
CATGCAGCTGTCCATGGCGCAAGGC
LOC_Os01g40940
OsAffx.2202.1.S1_x_at--550--652Chr01:23490261..23490285 (25 bp)
ATGCAGCTGTCCATGGCGCAAGGCG
LOC_Os01g40940
OsAffx.2202.1.S1_x_at--1146--9032Chr01:23490260..23490284 (25 bp)
TGCAGCTGTCCATGGCGCAAGGCGC
LOC_Os01g40940
OsAffx.2202.1.S1_x_at--333--5072Chr01:23490259..23490283 (25 bp)
GCAGCTGTCCATGGCGCAAGGCGCG
LOC_Os01g40940
OsAffx.2202.1.S1_x_at--632--4391Chr01:23490204..23490228 (25 bp)
GCCAAGGCCATCGATCAGGCGATCG
LOC_Os01g40940
OsAffx.2202.1.S1_x_at--183--891Chr01:23490200..23490224 (25 bp)
AGGCCATCGATCAGGCGATCGCCTA
LOC_Os01g40940
OsAffx.2202.1.S1_x_at--908--8791NONE
TGTTCGCGGCGCTGAAGCAAGAGCT
NONE
OsAffx.2202.1.S1_x_at--188--10651NONE
TTCGCGGCGCTGAAGCAAGAGCTGC
NONE
OsAffx.2202.1.S1_x_at--167--9351NONE
TCGCGGCGCTGAAGCAAGAGCTGCA
NONE
OsAffx.2202.1.S1_x_at--1049--4131NONE
CGCGGCGCTGAAGCAAGAGCTGCAA
NONE
Target Sequence 
TCATGCAGCTGTCCATGGCGCAAGGCGCGGCGGCGGCGCCGGCGACGAGGGTGATCGACGCCAAGGCCATCGATCAGGCG
ATCGCCTACCTGCTCATGTTCGCGGCGCTGAAGCAAGAGCTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2202.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis