Browse Element(s) Details


OsAffx.22022.1.S1_at

Description gb:NM_188870.1
DB_XREF= gi:34904823
GEN=OJ1484_G09.5
TID=OsAffx.22022.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1484_G09.5 (OJ1484_G09.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g276902/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27650NANA8+16716705..16720051transposon protein, putative, unclassified
LOC_Os08g27660OsAffx.22023.1.S1_x_at11/118+16729654..16730043hypothetical protein
LOC_Os08g27660OsAffx.22023.1.S1_at11/118+16729654..16730043hypothetical protein
LOC_Os08g27674OsAffx.17193.2.S1_s_at11/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.17193.1.S1_x_at11/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.1225.1.S1_at11/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.17193.2.S1_x_at10/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.8371.1.S1_at1/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.8372.1.S1_at1/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27690OsAffx.22022.1.S1_at2/118+16739537..16739791hypothetical protein
LOC_Os08g27700OsAffx.17195.1.S1_at11/118+16740754..16743564expressed protein
LOC_Os08g27700Os.26894.1.A1_at9/118+16740754..16743564expressed protein
LOC_Os08g27700Os.26894.1.A1_x_at8/118+16740754..16743564expressed protein
LOC_Os08g27710OsAffx.29383.1.S1_x_at1/118+16749942..16750418hypothetical protein
LOC_Os08g27720Os.12420.1.S1_at10/118+16759520..16763514Pirin, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22022.1.S1_at--930--2691Chr08:16737880..16737904 (25 bp)
AAGCTCGAGGATGTCGCTGTCGACC
NONE
OsAffx.22022.1.S1_at--219--4491Chr08:16737929..16737953 (25 bp)
GCCGCAACGTGCCAGAGGGTTTCAA
NONE
OsAffx.22022.1.S1_at--292--1071NONE
AGGGTTTCAAGGTCAGAGCTCGCCG
NONE
OsAffx.22022.1.S1_at--490--1771Chr08:16739351..16739375 (25 bp)
ACCGTCGACGACCAGTGCCAAATTT
NONE
OsAffx.22022.1.S1_at--528--1291Chr08:16739414..16739438 (25 bp)
AGATCCGAGGCATTCGTCACGGCTG
NONE
OsAffx.22022.1.S1_at--1094--1931Chr08:16739432..16739456 (25 bp)
ACGGCTGCCGTGGTCAGATGGCCTC
NONE
OsAffx.22022.1.S1_at--564--8371Chr08:16739472..16739496 (25 bp)
GGCGTCATCTTCAAGCAACTGAACT
NONE
OsAffx.22022.1.S1_at--7--9571Chr08:16739479..16739503 (25 bp)
TCTTCAAGCAACTGAACTGCCTCGT
NONE
OsAffx.22022.1.S1_at--871--9411Chr08:16739500..16739524 (25 bp)
TCGTCGACCGCATTGGCTTCACGGC
NONE
OsAffx.22022.1.S1_at--1107--3771Chr08:16739666..16739690 (25 bp)
CTCCTGGAAGGCGTCTGGGACACGT
LOC_Os08g27690
OsAffx.22022.1.S1_at--920--2171Chr08:16739685..16739709 (25 bp)
ACACGTGCTTGTGCGGCGCTCATGA
LOC_Os08g27690
Target Sequence 
AAGCTCGAGGATGTCGCTGTCGACCTCCCGCTCCTCGTCAACTACTGCGGCCGCAACGTGCCAGAGGGTTTCAAGGTCAG
AGCTCGCCGCTCACCGTCGACGACCAGTGCCAAATTTCGCCGTCAGCCGGCGACGCGCGACGGAGGAGCTAGGGCAGATC
CGAGGCATTCGTCACGGCTGCCGTGGTCAGATGGCCTCCTGCCCAAGCTACTCGGCGTCATCTTCAAGCAACTGAACTGC
CTCGTCGACCGCATTGGCTTCACGGCCGTCTACCGCCCATGGCGCACTGCCGCGGCCTTCGTCAACGCCCTGCACTGCGG
GCTCCCGTGGCTGCTCCTCCCGTCCCACGACACATCGTCCTACTTCAGCCTCTACTCCGACTCTCCGGCTTCACCCGCCA
CCTCAGCCTCCTGGAAGGCGTCTGGGACACGTGCTTGTGCGGCGCTCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis