Browse Element(s) Details


OsAffx.22029.1.S1_at

Description tigr:9635.m01948
TID=OsAffx.22029.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1932011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19274NANA7+11403510..11408208retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19290OsAffx.22028.1.S1_at11/117+11416294..11417842hypothetical protein
LOC_Os07g19300NANA7+11418861..11421764retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19310OsAffx.5375.1.S1_at11/117+11428869..11429193hypothetical protein
LOC_Os07g19310Os.10477.2.S1_x_at1/117+11428869..11429193hypothetical protein
LOC_Os07g19320OsAffx.22029.1.S1_at11/117+11430290..11434184NB-ARC domain containing protein
LOC_Os07g19330OsAffx.9850.1.S1_s_at11/117+11436101..11436766hypothetical protein
LOC_Os07g19330OsAffx.9850.2.S1_at11/117+11436101..11436766hypothetical protein
LOC_Os07g19340NANA7+11443742..11444970retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19350OsAffx.28521.2.S1_s_at11/117+11451905..11452377hypothetical protein
LOC_Os07g19350OsAffx.28521.1.S1_at11/117+11451905..11452377hypothetical protein
LOC_Os07g19360NANA7+11454139..11454667retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22029.1.S1_at--938--5831Chr07:11431099..11431123 (25 bp)
GACCTTGAAGCCCTCGCGAGAATAT
LOC_Os07g19320
OsAffx.22029.1.S1_at--459--4611Chr07:11431084..11431108 (25 bp)
GCGAGAATATCAGAGCTCCGCTTCC
LOC_Os07g19320
OsAffx.22029.1.S1_at--347--6551Chr07:11431011..11431035 (25 bp)
GATTATTCCCAAACCTGAGGCGTTG
LOC_Os07g19320
OsAffx.22029.1.S1_at--476--8871Chr07:11430996..11431020 (25 bp)
TGAGGCGTTGCCACACGGACATTGC
LOC_Os07g19320
OsAffx.22029.1.S1_at--603--8131Chr07:11430980..11431004 (25 bp)
GGACATTGCGCTCACATTTTTGCAT
LOC_Os07g19320
OsAffx.22029.1.S1_at--972--7491Chr07:11430903..11430927 (25 bp)
GTGGTGCCACCAGCTATGACGTTGG
LOC_Os07g19320
OsAffx.22029.1.S1_at--766--5411Chr07:11430872..11430896 (25 bp)
GAACCTCTTACTCCTGAAGACCGTG
LOC_Os07g19320
OsAffx.22029.1.S1_at--350--6171Chr07:11430572..11430596 (25 bp)
GAGGATATTTCAGCAACCGACCAAG
LOC_Os07g19320
OsAffx.22029.1.S1_at--164--1331Chr07:11430428..11430452 (25 bp)
AGAGGACACGGCTTTCAGATTAATT
LOC_Os07g19320
OsAffx.22029.1.S1_at--277--5511Chr07:11430400..11430424 (25 bp)
GAAAATAAACACACCCTTGCACCGG
LOC_Os07g19320
OsAffx.22029.1.S1_at--293--5871Chr07:11430322..11430346 (25 bp)
GAGCCATTTTCTGGGCCAGCGTCAA
LOC_Os07g19320
Target Sequence 
GACCTTGAAGCCCTCGCGAGAATATCAGAGCTCCGCTTCCTCTCTGTGAATGTCGAAGCAGGATTTTCATGGACCGTCCC
CGGCGGCGGATTATTCCCAAACCTGAGGCGTTGCCACACGGACATTGCGCTCACATTTTTGCATGGGGCGATGCCGATGC
TCATGGAGATTGAATTGTGTGTGGTGGCATCCGGGGGTGGTGCCACCAGCTATGACGTTGGCTTGGGGAACCTCTTACTC
CTGAAGACCGTGGAAGTTTGGATAGCTTGTGAGGGTGCGACGGCCAGTCAGTGGCTGATAAAGGAAGACAAAGAAGATGG
TGATGATGAGGATATTTCAGCAACCGACCAAGAGTTGTGTGATGAAGGAGGCAAAGAGGACACGGCTTTCAGATTAATTG
GCGAAAATAAACACACCCTTGCACCGGCGAGAGGAGGAGCTCCTGCTCGGCAGCAGGGCGGAGGAGCTCCCTTCTCCGGT
GAGCCATTTTCTGGGCCAGCGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis