Browse Element(s) Details


OsAffx.22100.1.S1_x_at

Description tigr:9629.m01171
TID=OsAffx.22100.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1210011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12070Os.32667.1.S1_at11/111+6561499..6564942Glycosyl hydrolase family 9 protein, expressed
LOC_Os01g12070Os.32667.2.S1_x_at11/111+6561499..6564942Glycosyl hydrolase family 9 protein, expressed
LOC_Os01g12080Os.12263.1.S1_at11/111+6568846..6573967uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os01g12090Os.3494.1.S1_at11/111+6580489..6583909expressed protein
LOC_Os01g12100OsAffx.22100.1.S1_x_at11/111+6584147..6584745expressed protein
LOC_Os01g12100Os.54460.1.A1_at1/111+6584147..6584745expressed protein
LOC_Os01g12110Os.3496.1.S1_at11/111+6587702..6588938expressed protein
LOC_Os01g12120NANA1+6603323..6604041hypothetical protein
LOC_Os01g12130Os.27838.1.S1_at11/111+6609156..6610707nodulin MtN3 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22100.1.S1_x_at--675--9091Chr01:6584367..6584391 (25 bp)
TGCTCTGCCTCGTCTTCCGGTGCGA
LOC_Os01g12100
OsAffx.22100.1.S1_x_at--806--9491Chr01:6584364..6584388 (25 bp)
TCTGCCTCGTCTTCCGGTGCGACGA
LOC_Os01g12100
OsAffx.22100.1.S1_x_at--401--3791Chr01:6584359..6584383 (25 bp)
CTCGTCTTCCGGTGCGACGACGGCG
LOC_Os01g12100
OsAffx.22100.1.S1_x_at--257--8371Chr01:6584254..6584278 (25 bp)
GGCGAGGGCGACGAATCCAACTCCG
LOC_Os01g12100
OsAffx.22100.1.S1_x_at--199--4611Chr01:6584253..6584277 (25 bp)
GCGAGGGCGACGAATCCAACTCCGA
LOC_Os01g12100
OsAffx.22100.1.S1_x_at--13--6131Chr01:6584251..6584275 (25 bp)
GAGGGCGACGAATCCAACTCCGACT
LOC_Os01g12100
OsAffx.22100.1.S1_x_at--1144--7531Chr01:6584249..6584273 (25 bp)
GGGCGACGAATCCAACTCCGACTCG
LOC_Os01g12100
OsAffx.22100.1.S1_x_at--653--5792Chr01:6584245..6584269 (25 bp)
GACGAATCCAACTCCGACTCGGACT
LOC_Os01g12100
OsAffx.22100.1.S1_x_at--265--3011Chr01:6584241..6584265 (25 bp)
AATCCAACTCCGACTCGGACTCGGA
LOC_Os01g12100
OsAffx.22100.1.S1_x_at--712--9431Chr01:6584227..6584251 (25 bp)
TCGGACTCGGACTCCGACTGCGACT
LOC_Os01g12100
OsAffx.22100.1.S1_x_at--713--9431Chr01:6584221..6584245 (25 bp)
TCGGACTCCGACTGCGACTCGGACT
LOC_Os01g12100
Target Sequence 
TGCTCTGCCTCGTCTTCCGGTGCGACGACGGCGACGAGGCGAACGCGGTGGCGGTCCGGAGGAGCGGCGGCGGCGCGCAG
GACGGCGGGTGGTGGCCGCGGGCGGCGTGGAAGGGCGAGGGCGACGAATCCAACTCCGACTCGGACTCGGACTCCGACTG
CGACTCGGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22100.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis