Browse Element(s) Details


OsAffx.22116.1.S1_x_at

Description gb:NM_188412.1
DB_XREF= gi:34903907
TID=OsAffx.22116.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g113901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11360OsAffx.11007.1.S1_at9/111+6105760..6108119hypothetical protein
LOC_Os01g11370Os.43507.1.A1_x_at11/111+6109613..6122311Helicase associated domain family protein, expressed
LOC_Os01g11370Os.50431.1.S1_at1/111+6109613..6122311Helicase associated domain family protein, expressed
LOC_Os01g11390OsAffx.22116.1.S1_x_at1/111+6126132..6126539hypothetical protein
LOC_Os01g11400NANA1+6129092..6129921hypothetical protein
LOC_Os01g11414Os.3917.1.S1_s_at11/111+6131005..6135960Sodium/calcium exchanger protein, expressed
LOC_Os01g11414Os.3917.2.S1_x_at11/111+6131005..6135960Sodium/calcium exchanger protein, expressed
LOC_Os01g11430Os.50336.1.S1_x_at11/111+6136384..6138446expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22116.1.S1_x_at--670--3771Chr01:6126368..6126392 (25 bp)
CTCGCCGTTGTCGTTAAGGGAATCA
LOC_Os01g11390
OsAffx.22116.1.S1_x_at--819--1871Chr01:6126122..6126146 (25 bp)
ACGATGACACTGTAGGCGCAGCCTG
NONE
OsAffx.22116.1.S1_x_at--344--2171Chr01:6126116..6126140 (25 bp)
ACACTGTAGGCGCAGCCTGGCCTGC
NONE
OsAffx.22116.1.S1_x_at--278--5791Chr01:6126067..6126091 (25 bp)
GACGACGACGCAAGCGCAGTCTGGC
NONE
OsAffx.22116.1.S1_x_at--297--1871Chr01:6126063..6126087 (25 bp)
ACGACGCAAGCGCAGTCTGGCCTGC
NONE
OsAffx.22116.1.S1_x_at--228--5171Chr01:6126058..6126082 (25 bp)
GCAAGCGCAGTCTGGCCTGCCGGCT
NONE
OsAffx.22116.1.S1_x_at--814--5011Chr01:6126052..6126076 (25 bp)
GCAGTCTGGCCTGCCGGCTCTGAGA
NONE
OsAffx.22116.1.S1_x_at--166--8331Chr01:6126037..6126061 (25 bp)
GGCTCTGAGACGAGGCACTCGACGA
NONE
OsAffx.22116.1.S1_x_at--146--3851Chr01:6126033..6126057 (25 bp)
CTGAGACGAGGCACTCGACGACGAC
NONE
OsAffx.22116.1.S1_x_at--829--4911Chr01:6125983..6126007 (25 bp)
GCTTCGAGACGAGGGGCTCAACGAT
NONE
OsAffx.22116.1.S1_x_at--225--8871Chr01:6125959..6125983 (25 bp)
TGATGACGACGCAGTGCAGCTCGAC
NONE
Target Sequence 
CTCGCCGTTGTCGTTAAGGGAATCAACGGCCGGGGCGCTTCTCCGCCATGGAGGCCGGCGAGCCCAGGAGGACAACGGCT
AAGGGGAACGAGCGACCGGGGAGCCGAGGGTGAAGCTCAGCGGGACGAGCGGCACGGGGGAAGGAGGTCGGTGGTGGCAG
CGACAAGGGTTGAGGACGGGGCGGTGGCCGGGGACCTTGCCGGGGGAGCAGACGATGACACTGTAGGCGCAGCCTGGCCT
GCCGGCTCCGAGACGAGGGGCTCGACGACGACGACGCAAGCGCAGTCTGGCCTGCCGGCTCTGAGACGAGGCACTCGACG
ACGACGACGACGGCGCAGCCCAGCTCGCCGGCTTCGAGACGAGGGGCTCAACGATGATGACGACGCAGTGCAGCTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22116.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis