Browse Element(s) Details


OsAffx.22166.1.S1_at

Description gb:NM_188186.1
DB_XREF= gi:34903455
GEN=OSJNBa0066B06.7
TID=OsAffx.22166.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0066B06.7 (OSJNBa0066B06.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2338011/11acyl CoA reductase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23340Os.51576.1.S1_at11/117+13148097..13150979expressed protein
LOC_Os07g23340Os.40189.1.S1_at11/117+13148097..13150979expressed protein
LOC_Os07g23354OsAffx.30725.3.S1_at11/117+13151954..13166338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23354Os.14491.2.S1_x_at4/117+13151954..13166338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23354OsAffx.30725.5.S1_x_at4/117+13151954..13166338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23354OsAffx.30725.1.S1_at4/117+13151954..13166338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23354Os.47463.1.S1_x_at4/117+13151954..13166338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23370NANA7+13172720..13174227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23380OsAffx.22166.1.S1_at11/117+13175561..13176776acyl CoA reductase, putative
LOC_Os07g23390NANA7+13180189..13181185hypothetical protein
LOC_Os07g23400NANA7+13185512..13189103retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g23410Os.15112.1.S1_at9/117+13199366..13200849Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009556biological_processmicrosporogenesis
GO:0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22166.1.S1_at--472--2151Chr07:13176721..13176745 (25 bp)
ACAGCCGGACCGTACTCATCACGGG
LOC_Os07g23380
OsAffx.22166.1.S1_at--177--371Chr07:13176704..13176728 (25 bp)
ATCACGGGCGCCACCGGTTTCATAG
LOC_Os07g23380
OsAffx.22166.1.S1_at--277--7571Chr07:13176699..13176723 (25 bp)
GGGCGCCACCGGTTTCATAGCGAAA
LOC_Os07g23380
OsAffx.22166.1.S1_at--696--1771Chr07:13176594..13176716 (25 bp)
ACCGGTTTCATAGCGAAACTACTTG
LOC_Os07g23380
OsAffx.22166.1.S1_at--309--2531Chr07:13176578..13176599 (22 bp)
AACTACTTGTGGAGAAGATCCTGCG
LOC_Os07g23380
OsAffx.22166.1.S1_at--1114--1651Chr07:13176548..13176572 (25 bp)
AGCCGGGTGTGAAGAGGCTCTACCT
LOC_Os07g23380
OsAffx.22166.1.S1_at--480--9511Chr07:13176523..13176547 (25 bp)
TCTCGTGCGCGCTGCGGATCAGGTT
LOC_Os07g23380
OsAffx.22166.1.S1_at--334--4771Chr07:13176513..13176537 (25 bp)
GCTGCGGATCAGGTTTCCGCGAACA
LOC_Os07g23380
OsAffx.22166.1.S1_at--358--9451Chr07:13176505..13176529 (25 bp)
TCAGGTTTCCGCGAACAGGAGAGTC
LOC_Os07g23380
OsAffx.22166.1.S1_at--594--6831Chr07:13176501..13176525 (25 bp)
GTTTCCGCGAACAGGAGAGTCGAAT
LOC_Os07g23380
OsAffx.22166.1.S1_at--977--4131Chr07:13176496..13176520 (25 bp)
CGCGAACAGGAGAGTCGAATCCGAG
LOC_Os07g23380
Target Sequence 
ACAGCCGGACCGTACTCATCACGGGCGCCACCGGTTTCATAGCGAAACTACTTGTGGAGAAGATCCTGCGGCTGCAGCCG
GGTGTGAAGAGGCTCTACCTTCTCGTGCGCGCTGCGGATCAGGTTTCCGCGAACAGGAGAGTCGAATCCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis