Browse Element(s) Details


OsAffx.30725.3.S1_at

Description gb:NM_188185.1
DB_XREF= gi:34903453
TID=OsAffx.30725.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0066B06.4 (OSJNBa0066B06.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2335411/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23300NANA7+13130853..13136998retrotransposon protein, putative, unclassified
LOC_Os07g23310Os.28943.1.S1_x_at1/117+13137445..13140667retrotransposon protein, putative, unclassified
LOC_Os07g23320Os.47130.4.A1_x_at1/117+13141603..13141929retrotransposon protein, putative, unclassified
LOC_Os07g23340Os.51576.1.S1_at11/117+13148097..13150979expressed protein
LOC_Os07g23340Os.40189.1.S1_at11/117+13148097..13150979expressed protein
LOC_Os07g23354OsAffx.30725.3.S1_at11/117+13151954..13166338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23354Os.14491.2.S1_x_at4/117+13151954..13166338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23354OsAffx.30725.5.S1_x_at4/117+13151954..13166338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23354OsAffx.30725.1.S1_at4/117+13151954..13166338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23354Os.47463.1.S1_x_at4/117+13151954..13166338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23370NANA7+13172720..13174227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23380OsAffx.22166.1.S1_at11/117+13175561..13176776acyl CoA reductase, putative
LOC_Os07g23390NANA7+13180189..13181185hypothetical protein
LOC_Os07g23400NANA7+13185512..13189103retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30725.3.S1_at--1091--5751Chr07:13152465..13152489 (25 bp)
GACGTGGCACGCACAAGCAGCGGTA
LOC_Os07g23354
OsAffx.30725.3.S1_at--627--1511Chr07:13152480..13152504 (25 bp)
AGCAGCGGTAGTGCGATCAGTGCCT
LOC_Os07g23354
OsAffx.30725.3.S1_at--539--6431Chr07:13152494..13152518 (25 bp)
GATCAGTGCCTACCGATCGATCGAG
LOC_Os07g23354
OsAffx.30725.3.S1_at--1042--5511Chr07:13152524..13152548 (25 bp)
GAAAAGCTACCGATCCACAACATCA
LOC_Os07g23354
OsAffx.30725.3.S1_at--664--6692Chr07:13152575..13152599 (25 bp)
GTTCCAATCTCATGTGGTTTCTATC
LOC_Os07g23354
OsAffx.30725.3.S1_at--418--7871Chr07:13152590..13152614 (25 bp)
GGTTTCTATCATTGTGCACCCCATC
LOC_Os07g23354
OsAffx.30725.3.S1_at--676--6331Chr07:13152625..13152649 (25 bp)
GATGCTTGCACTGGGTACTCAGATT
LOC_Os07g23354
OsAffx.30725.3.S1_at--243--6551Chr07:13152646..13152670 (25 bp)
GATTAATGGTGGCTGGTCCATGCAC
LOC_Os07g23354
OsAffx.30725.3.S1_at--726--7791Chr07:13152660..13152684 (25 bp)
GGTCCATGCACGAGTTCATATTCAT
LOC_Os07g23354
OsAffx.30725.3.S1_at--489--7511Chr07:13153032..13153056 (25 bp)
GTGGTTTTGCTCACGTGGTGCTGAC
LOC_Os07g23354
OsAffx.30725.3.S1_at--392--2511Chr07:13153135..13153159 (25 bp)
AACTTGTTCCTACCTCTGGGCAATG
LOC_Os07g23354
Target Sequence 
GACGTGGCACGCACAAGCAGCGGTAGTGCGATCAGTGCCTACCGATCGATCGAGATTCAGAAAAGCTACCGATCCACAAC
ATCAAAACTTGCGTTTTATGTTGTTGAATTGTTCCAATCTCATGTGGTTTCTATCATTGTGCACCCCATCCCCAATTCCC
GATGCTTGCACTGGGTACTCAGATTAATGGTGGCTGGTCCATGCACGAGTTCATATTCATGCATAAACAGAGCTATGTGT
GCTCGAGCTTGGTGGTGCGGTTTTGGAGGGTGGTTTTGCTCACGTGGTGCTGACGTGGCGAGCGGGAAGAAGCAGCCGCT
GCAGGGGCTGGACCACCGGGTGATGGTGGCGCTGGTCAAGATGGTCGCCGCCAACTTGTTCCTACCTCTGGGCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30725.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis