Browse Element(s) Details


OsAffx.22181.1.S1_s_at

Description gb:NM_188105.1
DB_XREF= gi:34903293
TID=OsAffx.22181.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1705011/11VQ motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17020Os.14702.1.S1_a_at10/111+9746901..9750547expressed protein
LOC_Os01g17030NANA1+9751320..9752575DnaJ domain containing protein
LOC_Os01g17040OsAffx.11084.2.S1_at10/111+9761751..9765259DnaJ domain containing protein, expressed
LOC_Os01g17050OsAffx.22181.1.S1_s_at11/111+9766796..9767815VQ motif family protein, expressed
LOC_Os01g17060Os.53230.1.S1_at11/111+9790737..9793607expressed protein
LOC_Os01g17060Os.46.1.A1_at8/111+9790737..9793607expressed protein
LOC_Os01g17060OsAffx.13299.1.S1_x_at2/111+9790737..9793607expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22181.1.S1_s_at--497--8432Chr03:35254114..35254156 (25 bp)
GGCCTTCCCGACATTGGAGAGCTGG
NONE
OsAffx.22181.1.S1_s_at--545--7991Chr01:9767056..9767080 (25 bp)
GGATGATCTGATTCTGACCTCGATT
LOC_Os01g17050
OsAffx.22181.1.S1_s_at--1119--4271Chr01:9766948..9766972 (25 bp)
CCTCCCCTTAGCCAAGCTGATGATG
LOC_Os01g17050
OsAffx.22181.1.S1_s_at--1110--3851Chr01:9766932..9766956 (25 bp)
CTGATGATGATGTCGTAGCCAAGTA
LOC_Os01g17050
OsAffx.22181.1.S1_s_at--612--7191Chr01:9766921..9766945 (25 bp)
GTCGTAGCCAAGTAGCGTAGCACTA
LOC_Os01g17050
OsAffx.22181.1.S1_s_at--1151--4351Chr01:9766914..9766938 (25 bp)
CCAAGTAGCGTAGCACTAGAAACCA
LOC_Os01g17050
OsAffx.22181.1.S1_s_at--478--4811Chr01:9766871..9766895 (25 bp)
GCTCTCTTTTTCTCATGGTGTAATT
LOC_Os01g17050
OsAffx.22181.1.S1_s_at--500--7751Chr01:9766855..9766879 (25 bp)
GGTGTAATTATTACTCCTTTCTGTT
LOC_Os01g17050
OsAffx.22181.1.S1_s_at--1057--131Chr01:9766846..9766870 (25 bp)
ATTACTCCTTTCTGTTTGTTGCTCA
LOC_Os01g17050
OsAffx.22181.1.S1_s_at--455--10611Chr01:9766837..9766861 (25 bp)
TTCTGTTTGTTGCTCATCATTGCCT
LOC_Os01g17050
OsAffx.22181.1.S1_s_at--206--4831Chr01:9766826..9766850 (25 bp)
GCTCATCATTGCCTTCATTTAGTTA
LOC_Os01g17050
Target Sequence 
GGCCTTCCCGACATTGGAGAGCTGGGGGATGATCTGATTCTGACCTCGATTTCTCCTCTCTTTTTTTTTCTCCCATAAAA
TTTCAGGGTTTTTTTTGGTCCGTCCGATGCGAGGATCGGACGGCTGCGGGTTGTCCTCCCCTTAGCCAAGCTGATGATGA
TGTCGTAGCCAAGTAGCGTAGCACTAGAAACCAAATCAGCCTCTCTCTCTCGCTCTCTTTTTCTCATGGTGTAATTATTA
CTCCTTTCTGTTTGTTGCTCATCATTGCCTTCATTTAGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22181.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis