Browse Element(s) Details


OsAffx.22211.2.S1_s_at

Description tigr:9629.m01563
TID=OsAffx.22211.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1574011/11expressed protein
LOC_Os05g165301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15700OsAffx.27865.1.S1_x_at10/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15700Os.53832.1.S1_at8/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15700OsAffx.9725.1.S1_at3/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15700OsAffx.27865.2.S1_at1/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15709OsAffx.11065.1.S1_at11/111+8832376..8833804Transferase family protein
LOC_Os01g15709OsAffx.11065.1.S1_x_at11/111+8832376..8833804Transferase family protein
LOC_Os01g15720NANA1+8837748..8843254Tobamovirus movement protein containing protein
LOC_Os01g15730NANA1+8844451..8847544hypothetical protein
LOC_Os01g15740OsAffx.22211.2.S1_s_at11/111+8850618..8853753expressed protein
LOC_Os01g15740OsAffx.22211.2.S1_at9/111+8850618..8853753expressed protein
LOC_Os01g15750NANA1+8861073..8864363retrotransposon protein, putative, unclassified
LOC_Os01g15760NANA1+8864992..8871146retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22211.2.S1_s_at--480--8291Chr01:8852417..8852441 (25 bp)
GGCTTGCCGGACTTTCTCAGCCACT
LOC_Os01g15740
OsAffx.22211.2.S1_s_at--164--9191Chr01:8852421..8852445 (25 bp)
TGCCGGACTTTCTCAGCCACTTCTT
LOC_Os01g15740
OsAffx.22211.2.S1_s_at--1109--2011Chr01:8852562..8852586 (25 bp)
ACTACGGCACGATGGGCGCGTCGTT
LOC_Os01g15740
OsAffx.22211.2.S1_s_at--667--4651Chr01:8852579..8852603 (25 bp)
GCGTCGTTGCGGAAGATCCAGCTCC
LOC_Os01g15740
OsAffx.22211.2.S1_s_at--430--5351Chr01:8852590..8852614 (25 bp)
GAAGATCCAGCTCCCGCACGGCAAG
LOC_Os01g15740
OsAffx.22211.2.S1_s_at--234--2931Chr01:8852612..8852635 (24 bp)
AAGGACGTGCCGCTGTCGGTGCAGA
LOC_Os01g15740
OsAffx.22211.2.S1_s_at--483--5533Chr01:10917815..10917839 (25 bp)
GAAAAACACCAAATCAACACGAAAG
NONE
OsAffx.22211.2.S1_s_at--478--7952Chr02:22475153..22475172 (20 bp)
GGATATGGATTTGATTTGGACTCAA
NONE
OsAffx.22211.2.S1_s_at--905--8954Chr06:1083860..1083882 (23 bp)
TGAAATTAACCCCATAAATACAAGG
NONE
OsAffx.22211.2.S1_s_at--1155--2211Chr01:8853086..8853110 (25 bp)
ACAAGGATTTCATGGGACTGCTACA
LOC_Os01g15740
OsAffx.22211.2.S1_s_at--541--191Chr01:8853092..8853116 (25 bp)
ATTTCATGGGACTGCTACAACAAGA
LOC_Os01g15740
Target Sequence 
GGCTTGCCGGACTTTCTCAGCCACTTCTTCCCCTTCGCCGGCCGCGTCGTCGCCAACCCGTTCTCCGGCCTCCCCGAGAT
CCACTGCAACAACCAAGGCGCGGAGCTTGTCGTCGGCGAGGTCGGCGTGGCGCTCGCTAGCCTGGACTACGGCACGATGG
GCGCGTCGTTGCGGAAGATCCAGCTCCCGCACGGCAAGGACGTGCCGCTGTCGGTGCAGATGATGAAAAACACCAAATCA
ACACGAAAGGAAGTTGGATATGGATTTGATTTGGACTCAAAATCGGGTGAAATTAACCCCATAAATACAAGGATTTCATG
GGACTGCTACAACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22211.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis