Browse Element(s) Details


OsAffx.22386.1.S1_x_at

Description tigr:9635.m01590
TID=OsAffx.22386.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1595011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15900NANA7+9239530..9241129hypothetical protein
LOC_Os07g15910OsAffx.22387.1.S1_at11/117+9244892..9246132hypothetical protein
LOC_Os07g15920OsAffx.28469.1.S1_at11/117+9248139..9248588hypothetical protein
LOC_Os07g15930OsAffx.28470.1.S1_at11/117+9250697..9254014Legume lectins beta domain containing protein, expressed
LOC_Os07g15940Os.50228.1.S1_at10/117+9258849..9261135receptor like protein kinase, putative, expressed
LOC_Os07g15950OsAffx.22386.1.S1_x_at11/117+9264516..9265010hypothetical protein
LOC_Os07g15960Os.10626.4.A1_s_at11/117+9280669..9281292hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22386.1.S1_x_at--698--7191Chr07:9264954..9264978 (25 bp)
GTCGGTGTGCATGACAGTGCAGCCA
LOC_Os07g15950
OsAffx.22386.1.S1_x_at--1123--3511Chr07:9264945..9264969 (25 bp)
CATGACAGTGCAGCCAACGGTGGGC
LOC_Os07g15950
OsAffx.22386.1.S1_x_at--580--3991Chr07:9264898..9264922 (25 bp)
CGGGCGGTAGCGGAGATGCGGGCAA
LOC_Os07g15950
OsAffx.22386.1.S1_x_at--426--8392Chr01:37449439..37449511 (24 bp)
GGCGCACGCGGGACGCAGAGGTGGT
NONE
OsAffx.22386.1.S1_x_at--898--8171Chr07:9264772..9264796 (25 bp)
GGAACGCAGGCAGCGGTGAACTCCT
LOC_Os07g15950
OsAffx.22386.1.S1_x_at--674--3472Chr07:9264766..9264790 (25 bp)
CAGGCAGCGGTGAACTCCTCCGGGA
LOC_Os07g15950
OsAffx.22386.1.S1_x_at--2--1991Chr07:9264753..9264777 (25 bp)
ACTCCTCCGGGAGGGAGCAGTGGTG
LOC_Os07g15950
OsAffx.22386.1.S1_x_at--902--5931Chr07:9264739..9264763 (25 bp)
GAGCAGTGGTGGCACGGGACGCAGA
LOC_Os07g15950
OsAffx.22386.1.S1_x_at--523--5791Chr07:9264722..9264746 (25 bp)
GACGCAGAGGCGGTTGCATCTCGCC
LOC_Os07g15950
OsAffx.22386.1.S1_x_at--620--6211Chr07:9264716..9264740 (25 bp)
GAGGCGGTTGCATCTCGCCTCTCCT
LOC_Os07g15950
OsAffx.22386.1.S1_x_at--1094--4152Chr07:9264587..9264611 (25 bp)
CGCCGCCGTCATGCTGAGAGAGAGA
LOC_Os07g15950
Target Sequence 
GTCGGTGTGCATGACAGTGCAGCCAACGGTGGGCGGGGGCGGTCGGCGCGGTCAGGCGGGCGGTAGCGGAGATGCGGGCA
AGGTGGAGAGGCAGGCGGCGGAGGAGAGGGACGCGGAGGTGGTGGCGCACGCGGGACGCAGAGGTGGTGGCGGCGAACTC
CGGGAGGGAGCAGCGGCGACGTGGAACGCAGGCAGCGGTGAACTCCTCCGGGAGGGAGCAGTGGTGGCACGGGACGCAGA
GGCGGTTGCATCTCGCCTCTCCTCCGGCCGACTCTCCGCCGCGACCCACCTCTCCGCCTCGCCGCCATCCGCGCCGACCG
CCCCGCCCACCATCGGCCGCACCGCCTTGCGCGCCGACCACGCCGTCCGCCGCCGTCATGCTGAGAGAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22386.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis