Browse Element(s) Details


OsAffx.22402.1.S1_at

Description gb:NM_186865.1
DB_XREF= gi:34900815
GEN=P0021G06.32
TID=OsAffx.22402.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0021G06.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g147104/11transposon protein, putative, Mariner sub-class
LOC_Os07g147202/11hypothetical protein
LOC_Os02g207601/11transposon protein, putative, Mariner sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14690OsAffx.22403.1.S1_at10/117+8366168..8367375hypothetical protein
LOC_Os07g14700Os.31042.1.S1_at8/117+8380274..8381360Harpin-induced protein 1 containing protein, expressed
LOC_Os07g14710OsAffx.22402.1.S1_at4/117+8390048..8391870transposon protein, putative, Mariner sub-class
LOC_Os07g14720OsAffx.22402.1.S1_at2/117+8392424..8393109hypothetical protein
LOC_Os07g14740Os.40417.1.A1_at11/117+8405063..8406024Harpin-induced protein 1 containing protein, expressed
LOC_Os07g14740OsAffx.22756.1.S1_s_at1/117+8405063..8406024Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22402.1.S1_at--478--9151Chr07:8391420..8391444 (25 bp)
TGCGAAGACACACATTGCTATTGAT
LOC_Os07g14710
OsAffx.22402.1.S1_at--177--6432Chr07:8391445..8391562 (25 bp)
GATCTAGAATTCTTAGCCCTGCAGT
LOC_Os07g14710
OsAffx.22402.1.S1_at--83--10571Chr07:8391552..8391571 (20 bp)
TTCTTAGCCCTGCAGTCATTGTTTC
LOC_Os07g14710
OsAffx.22402.1.S1_at--1152--7411Chr07:8391658..8391677 (20 bp)
GTGTTCCTCACACAACAAGGTGCCG
LOC_Os07g14710
OsAffx.22402.1.S1_at--752--2191Chr07:8392172..8392191 (20 bp)
ACAAGGTGCCGATCAGGAGAACTTC
NONE
OsAffx.22402.1.S1_at--158--8071Chr07:8392182..8392206 (25 bp)
GGAGAACTTCGCTCATGATCGTCAA
NONE
OsAffx.22402.1.S1_at--252--4831Chr07:8392192..8392216 (25 bp)
GCTCATGATCGTCAATTCAACCGTG
NONE
OsAffx.22402.1.S1_at--1006--3991Chr07:8392213..8392237 (25 bp)
CGTGTTGTCATCACAGGTTTCTGCA
NONE
OsAffx.22402.1.S1_at--641--7871Chr07:8392228..8392252 (25 bp)
GGTTTCTGCATCCATCGTTGTCCTC
NONE
OsAffx.22402.1.S1_at--161--8531Chr07:8392430..8392454 (25 bp)
TGGACACGAAGCGATCACGCGCAGC
LOC_Os07g14720
OsAffx.22402.1.S1_at--1034--4571Chr07:8392566..8392590 (25 bp)
GCGCTCGCCGATGTGTTACAACTAA
LOC_Os07g14720
Target Sequence 
TGCGAAGACACACATTGCTATTGATGATCTAGAATTCTTAGCCCTGCAGTCATTGTTTCATAAGTCATCTCCATCAAGCA
TCGAAGAGATTGAGACAAATGTGATCAAAGCATATGAAGAATATTCGGTGGATAAATCAGATTGTGTGTTCCTCACACAA
CAAGGTGCCGATCAGGAGAACTTCGCTCATGATCGTCAATTCAACCGTGTTGTCATCACAGGTTTCTGCATCCATCGTTG
TCCTCGCATCGTCGACGAGATGGCGTGGACACGAAGCGATCACGCGCAGCCGAATTCCATCTCTGCTTGCTGCCGCATGC
GCTGTCAACTCCCGACCTTTGTCTTGCCACTCGCCGGGCACTCTGCCATCTTCTCTGCCATATCCATCGCGCTGCTCGCC
GGCGCTCGCCGATGTGTTACAACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis