Browse Element(s) Details


OsAffx.22460.1.S1_at

Description gb:NM_186516.1
DB_XREF= gi:34900117
TID=OsAffx.22460.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1116_C08.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1145010/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11410Os.7449.2.S1_x_at11/117+6274377..6275121Seed allergenic protein RA5 precursor, putative, expressed
LOC_Os07g11420NANA7+6281884..6285344transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11430Os.47463.1.S1_x_at3/117+6290033..6291512transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11430Os.14491.2.S1_x_at3/117+6290033..6291512transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11440Os.57449.1.S1_x_at1/117+6292915..6294607Chalcone synthase, putative, expressed
LOC_Os07g11450OsAffx.22460.1.S1_at10/117+6298846..6300472retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g11460NANA7+6302225..6305060hypothetical protein
LOC_Os07g11480Os.1709.1.S1_x_at11/117+6306382..6310864retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11480Os.31497.2.S1_x_at1/117+6306382..6310864retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11490Os.18191.1.S1_at11/117+6314018..6316359expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22460.1.S1_at--1018--8391NONE
GGCGCGGAGGACGTATAATCACATC
NONE
OsAffx.22460.1.S1_at--1095--6311Chr07:6299259..6299283 (25 bp)
GATGCGAAACATGTTGATACCGATG
LOC_Os07g11450
OsAffx.22460.1.S1_at--179--8591Chr07:6299236..6299260 (25 bp)
TGGTTTTGGAAATCCGGTTGCTCGG
LOC_Os07g11450
OsAffx.22460.1.S1_at--194--8271Chr07:6299213..6299237 (25 bp)
GGCAGGAAGAATTCACGGTACCGTC
LOC_Os07g11450
OsAffx.22460.1.S1_at--441--10491Chr07:6299186..6299210 (25 bp)
TTAACGGTAGCGCACAGCACGCGAG
LOC_Os07g11450
OsAffx.22460.1.S1_at--84--451Chr07:6299092..6299116 (25 bp)
ATCTTATTGCTACCTTCTTCTAGTG
LOC_Os07g11450
OsAffx.22460.1.S1_at--902--4851Chr07:6299084..6299108 (25 bp)
GCTACCTTCTTCTAGTGCAAAACGT
LOC_Os07g11450
OsAffx.22460.1.S1_at--390--6591Chr07:6299027..6299051 (25 bp)
GATTGCCATTGAGCACCGGCGAGTG
LOC_Os07g11450
OsAffx.22460.1.S1_at--2--8011Chr07:6298963..6298987 (25 bp)
GGAGGCCAACCCAAGATTGATTCCA
LOC_Os07g11450
OsAffx.22460.1.S1_at--86--6591Chr07:6298949..6298973 (25 bp)
GATTGATTCCACGTATGTTGCGAGG
LOC_Os07g11450
OsAffx.22460.1.S1_at--250--931Chr07:6298927..6298951 (25 bp)
AGGAGGTGGCGGCTCAAATTATATA
LOC_Os07g11450
Target Sequence 
GGCGCGGAGGACGTATAATCACATCATAGGATCTATACATGTAAACAAGACAGTAAAGGATGAACAGATCGAAGATGCGA
AACATGTTGATACCGATGGTTTTGGAAATCCGGTTGCTCGGCAGGAAGAATTCACGGTACCGTCCCTTAACGGTAGCGCA
CAGCACGCGAGCGAAGAGGAAGACGAGCCGTATGAACGAATAGGGAGCAGTCGCGTGGAGCGCTTCCCAAAAACCCAAAA
ATCTTATTGCTACCTTCTTCTAGTGCAAAACGTAGAAGGCGCAGGTTTCGGAGAGCTGCTCTCCCGATTGCCATTGAGCA
CCGGCGAGTGGGATGGAGTAGACTACAAACAACAACGTAGTACGGAGGAGGAGGCCAACCCAAGATTGATTCCACGTATG
TTGCGAGGAGGTGGCGGCTCAAATTATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis