Browse Element(s) Details


OsAffx.22504.1.S1_at

Description tigr:9635.m00318
TID=OsAffx.22504.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0393011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03890OsAffx.28253.1.S1_at11/117+1621065..1627039lectin receptor kinase 7, putative
LOC_Os07g03890OsAffx.28253.2.S1_at11/117+1621065..1627039lectin receptor kinase 7, putative
LOC_Os07g03900OsAffx.5196.1.S1_at11/117+1629523..1631553Lectin receptor-type protein kinase, putative
LOC_Os07g03910NANA7+1635181..1636717Hexose carrier protein HEX6, putative
LOC_Os07g03920Os.45971.1.S1_x_at8/117+1638182..1641552lectin receptor kinase 7, putative, expressed
LOC_Os07g03920Os.45971.1.S1_at5/117+1638182..1641552lectin receptor kinase 7, putative, expressed
LOC_Os07g03930OsAffx.22504.1.S1_at11/117+1645313..1647256Protein kinase domain containing protein, expressed
LOC_Os07g03940OsAffx.19542.3.S1_x_at6/117+1656345..1660567retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g03950OsAffx.5197.1.S1_at11/117+1664392..1666302lectin receptor kinase 7, putative
LOC_Os07g03960Os.35257.1.S1_at11/117+1667610..1669621Hexose carrier protein HEX6, putative, expressed
LOC_Os07g03970OsAffx.10273.1.S1_at11/117+1669750..1671771lectin receptor kinase 7, putative
LOC_Os07g03970Os.45971.1.S1_x_at2/117+1669750..1671771lectin receptor kinase 7, putative

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22504.1.S1_at--57--1931Chr07:1645839..1645863 (25 bp)
ACGGTCATCTAGGAGACTTTGGCCT
LOC_Os07g03930
OsAffx.22504.1.S1_at--440--2471Chr07:1645778..1645802 (25 bp)
AACACATGTGGCTGGTACCTTTGGA
LOC_Os07g03930
OsAffx.22504.1.S1_at--1110--231Chr07:1645752..1645776 (25 bp)
ATATAGCACCAGAGATGGCGCGCAC
LOC_Os07g03930
OsAffx.22504.1.S1_at--1047--4891Chr07:1645720..1645744 (25 bp)
GCATCCCCTCTAACAGACGTATATG
LOC_Os07g03930
OsAffx.22504.1.S1_at--1109--131Chr07:1645644..1645668 (25 bp)
ATTACACGCATGATAGCCCGACAAT
LOC_Os07g03930
OsAffx.22504.1.S1_at--220--6451Chr07:1645584..1645608 (25 bp)
GATCACTGACAAGCACACTGGACGT
LOC_Os07g03930
OsAffx.22504.1.S1_at--187--1091Chr07:1645508..1645532 (25 bp)
AGGGCTGTTGTGTGCAAATCCAATT
LOC_Os07g03930
OsAffx.22504.1.S1_at--351--551Chr07:1645491..1645515 (25 bp)
ATCCAATTTGTACCAGAAGGCCCGG
LOC_Os07g03930
OsAffx.22504.1.S1_at--177--5291Chr07:1645476..1645500 (25 bp)
GAAGGCCCGGTATGCGTCAAGTCAT
LOC_Os07g03930
OsAffx.22504.1.S1_at--720--6031Chr07:1645435..1645459 (25 bp)
GAGATGCCACTTCCTCGGTTGATGC
LOC_Os07g03930
OsAffx.22504.1.S1_at--264--491Chr07:1645349..1645373 (25 bp)
ATCTGTGCCATCTACAGTTTGCAGC
LOC_Os07g03930
Target Sequence 
ACGGTCATCTAGGAGACTTTGGCCTTGCAAGACTATATGAGCATGGCAATGACCCACAAACAACACATGTGGCTGGTACC
TTTGGATATATAGCACCAGAGATGGCGCGCACCGGTAAGGCATCCCCTCTAACAGACGTATATGCATTTGCCATTTTTGT
TCTTGAGGTAACATGTGGGCGAAGACCTATTAACAATTACACGCATGATAGCCCGACAATATTAGTTGATTGGGTTGTTG
AGCATTGGCAAAAAGGATCACTGACAAGCACACTGGACGTCAGATTACAAGGAGACCACAATGCAGATGAGGTCAATCTT
GTTTTAAAGCTAGGGCTGTTGTGTGCAAATCCAATTTGTACCAGAAGGCCCGGTATGCGTCAAGTCATGCAATACCTCGA
CAATGAGATGCCACTTCCTCGGTTGATGCCCACAAACTTGAGTTATAGCATGTTGGGATATTTGCAAAACGACGGTTTCG
ACCAGTACAAATCTGTGCCATCTACAGTTTGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22504.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis