Browse Element(s) Details


OsAffx.22572.1.S1_at

Description tigr:9634.m00708
TID=OsAffx.22572.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0775011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07710NANA6+3732347..3735479hypothetical protein
LOC_Os06g07720OsAffx.8279.1.S1_at1/116+3735816..3741496retrotransposon protein, putative, unclassified
LOC_Os06g07720Os.52731.1.S1_at1/116+3735816..3741496retrotransposon protein, putative, unclassified
LOC_Os06g07730OsAffx.16451.1.A1_x_at1/116+3741797..3742687hypothetical protein
LOC_Os06g07730OsAffx.31867.1.S1_x_at1/116+3741797..3742687hypothetical protein
LOC_Os06g07740OsAffx.4756.1.S1_s_at11/116+3746262..3748210myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g07750OsAffx.22572.1.S1_x_at11/116+3751005..3751433hypothetical protein
LOC_Os06g07750OsAffx.22572.1.S1_at11/116+3751005..3751433hypothetical protein
LOC_Os06g07760Os.44735.1.S1_at9/116+3758841..3761129expressed protein
LOC_Os06g07770OsAffx.22571.2.S1_x_at11/116+3761999..3771827expressed protein
LOC_Os06g07780OsAffx.15303.1.S1_at11/116+3772673..3775481Synaptobrevin family protein, expressed
LOC_Os06g07780OsAffx.15303.1.S1_s_at11/116+3772673..3775481Synaptobrevin family protein, expressed
LOC_Os06g07780Os.3539.1.S1_at10/116+3772673..3775481Synaptobrevin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22572.1.S1_at--201--2211Chr06:3751069..3751093 (25 bp)
ACAACTCCGGCGCCAGTAGCAGCAA
LOC_Os06g07750
OsAffx.22572.1.S1_at--528--2151Chr06:3751093..3751117 (25 bp)
ACAGCACCGGCGACACGAAGCACTG
LOC_Os06g07750
OsAffx.22572.1.S1_at--838--8371Chr06:3751101..3751125 (25 bp)
GGCGACACGAAGCACTGCCGCATTA
LOC_Os06g07750
OsAffx.22572.1.S1_at--1007--4591Chr06:3751102..3751126 (25 bp)
GCGACACGAAGCACTGCCGCATTAT
LOC_Os06g07750
OsAffx.22572.1.S1_at--219--4111Chr06:3751103..3751127 (25 bp)
CGACACGAAGCACTGCCGCATTATG
LOC_Os06g07750
OsAffx.22572.1.S1_at--866--5631Chr06:3751104..3751128 (25 bp)
GACACGAAGCACTGCCGCATTATGA
LOC_Os06g07750
OsAffx.22572.1.S1_at--866--2171Chr06:3751105..3751129 (25 bp)
ACACGAAGCACTGCCGCATTATGAG
LOC_Os06g07750
OsAffx.22572.1.S1_at--767--4111Chr06:3751108..3751132 (25 bp)
CGAAGCACTGCCGCATTATGAGGGA
LOC_Os06g07750
OsAffx.22572.1.S1_at--753--1851Chr06:3751273..3751297 (25 bp)
ACGACAATTTGGGCATGCCCGTTGT
LOC_Os06g07750
OsAffx.22572.1.S1_at--30--4111Chr06:3751274..3751298 (25 bp)
CGACAATTTGGGCATGCCCGTTGTG
LOC_Os06g07750
OsAffx.22572.1.S1_at--666--7491Chr06:3751347..3751371 (25 bp)
GTGGTGGCGATGAACAGCGGCGACG
LOC_Os06g07750
Target Sequence 
ACAACTCCGGCGCCAGTAGCAGCAACAGCACCGGCGACACGAAGCACTGCCGCATTATGAGGGAGCTCCAGGCGAGGTTC
CCGTCGAGGACCATGGTTGAGGTAATCGACTTGTACATTAATCTCACGGTGGAGACGACGGCGCAGCTGCAGGACGCCGG
CGCCACCGCCGCCGCCGTCGTGCACCCTACTTTTGGCCTCGCGAACGACAATTTGGGCATGCCCGTTGTGAACAACAACA
ATGGCATGGTGTTTGGTGGTGCTCCTATGAAGGAGGGGGTGGTGGCGATGAACAGCGGCGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis