Browse Element(s) Details


OsAffx.4756.1.S1_s_at

Description tigr:9634.m00707
TID=OsAffx.4756.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=myb-like DNA-binding domain, SHAQKYF class, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0774011/11myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g0770011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07690OsAffx.15300.1.S1_at11/116+3720624..3722003hypothetical protein
LOC_Os06g07700OsAffx.4756.1.S1_s_at11/116+3722343..3724139hypothetical protein
LOC_Os06g07710NANA6+3732347..3735479hypothetical protein
LOC_Os06g07720OsAffx.8279.1.S1_at1/116+3735816..3741496retrotransposon protein, putative, unclassified
LOC_Os06g07720Os.52731.1.S1_at1/116+3735816..3741496retrotransposon protein, putative, unclassified
LOC_Os06g07730OsAffx.16451.1.A1_x_at1/116+3741797..3742687hypothetical protein
LOC_Os06g07730OsAffx.31867.1.S1_x_at1/116+3741797..3742687hypothetical protein
LOC_Os06g07740OsAffx.4756.1.S1_s_at11/116+3746262..3748210myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g07750OsAffx.22572.1.S1_x_at11/116+3751005..3751433hypothetical protein
LOC_Os06g07750OsAffx.22572.1.S1_at11/116+3751005..3751433hypothetical protein
LOC_Os06g07760Os.44735.1.S1_at9/116+3758841..3761129expressed protein
LOC_Os06g07770OsAffx.22571.2.S1_x_at11/116+3761999..3771827expressed protein
LOC_Os06g07780OsAffx.15303.1.S1_at11/116+3772673..3775481Synaptobrevin family protein, expressed
LOC_Os06g07780OsAffx.15303.1.S1_s_at11/116+3772673..3775481Synaptobrevin family protein, expressed
LOC_Os06g07780Os.3539.1.S1_at10/116+3772673..3775481Synaptobrevin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4756.1.S1_s_at--122--8992Chr06:3747687..3747711 (25 bp)
TGAACCCGGACAATGCTGATGACGA
LOC_Os06g07740
OsAffx.4756.1.S1_s_at--260--5452Chr06:3747686..3747710 (25 bp)
GAACCCGGACAATGCTGATGACGAT
LOC_Os06g07740
OsAffx.4756.1.S1_s_at--757--2612Chr06:3747685..3747709 (25 bp)
AACCCGGACAATGCTGATGACGATG
LOC_Os06g07740
OsAffx.4756.1.S1_s_at--852--5732Chr06:3746766..3746790 (25 bp)
GACTGGGATGCGTGTGTACGGGCGT
LOC_Os06g07740
OsAffx.4756.1.S1_s_at--1080--7972Chr06:3746761..3746785 (25 bp)
GGATGCGTGTGTACGGGCGTGGCGA
LOC_Os06g07740
OsAffx.4756.1.S1_s_at--370--3992Chr06:3746748..3746772 (25 bp)
CGGGCGTGGCGACTGGAGAAACATC
LOC_Os06g07740
OsAffx.4756.1.S1_s_at--806--2532Chr06:3746669..3746693 (25 bp)
AACTACTTCCACATGATGGAGATCG
LOC_Os06g07740
OsAffx.4756.1.S1_s_at--1098--2052Chr06:3746665..3746689 (25 bp)
ACTTCCACATGATGGAGATCGCCGC
LOC_Os06g07740
OsAffx.4756.1.S1_s_at--1114--3352Chr06:3746386..3746410 (25 bp)
CACCGTTCTGGGTTCCGCTGCTGTA
LOC_Os06g07740
OsAffx.4756.1.S1_s_at--890--10572Chr06:3746381..3746405 (25 bp)
TTCTGGGTTCCGCTGCTGTACAACC
LOC_Os06g07740
OsAffx.4756.1.S1_s_at--505--7992Chr06:3746304..3746328 (25 bp)
GGATGATCAGCAGATGAAGATGGCT
LOC_Os06g07740
Target Sequence 
TGAACCCGGACAATGCTGATGACGATGTGCTTTGGACCGATTATGAGCACAGGCTGTTCCTGACTGGGATGCGTGTGTAC
GGGCGTGGCGACTGGAGAAACATCGCGAGGTACTTCGTCGGAAGCAAGACGCCGGAGCAGGTCTCCATGTACGCCGATAA
CTACTTCCACATGATGGAGATCGCCGCGGCCATGGAAGCCGACGGCGACGACGATGACGACCACCATGAAAACAATAACA
ACAACTTGGGCGGCGGGCAGCTGCACGCCGTCGTCGGCGCCGTCGAGCACCATGAAAATTACAACAACAACAACTTAGGC
GGCGGGCAGCTGAACGCCGGCCTCGGCGCCGTCGGGCACGGCCCCGGTGCCGGGCACATTGCTCCGGCGACCTCCTCCAA
CAACAACGTCGCCGCCGCCGCCGCGAACAACAACGTCGACGCACCGTTCTGGGTTCCGCTGCTGTACAACCTCGAGATAG
AGCAGCGCATGATGGAGATGCAGGCGCAGTCGCAGAAGGCCTGGGATGATCAGCAGATGAAGATGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4756.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis