Browse Element(s) Details


OsAffx.15300.1.S1_at

Description tigr:9634.m00702
TID=OsAffx.15300.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0769011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07640OsAffx.27493.1.S1_at11/116+3695118..3696877myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g07650OsAffx.27494.2.S1_s_at11/116+3701157..3703237myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g07660OsAffx.27494.2.S1_s_at11/116+3706187..3710819myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g07670NANA6+3712856..3713320retrotransposon protein, putative, unclassified
LOC_Os06g07679OsAffx.22452.1.S1_x_at1/116+3714109..3714314NA
LOC_Os06g07690OsAffx.15300.1.S1_at11/116+3720624..3722003hypothetical protein
LOC_Os06g07700OsAffx.4756.1.S1_s_at11/116+3722343..3724139hypothetical protein
LOC_Os06g07710NANA6+3732347..3735479hypothetical protein
LOC_Os06g07720OsAffx.8279.1.S1_at1/116+3735816..3741496retrotransposon protein, putative, unclassified
LOC_Os06g07720Os.52731.1.S1_at1/116+3735816..3741496retrotransposon protein, putative, unclassified
LOC_Os06g07730OsAffx.16451.1.A1_x_at1/116+3741797..3742687hypothetical protein
LOC_Os06g07730OsAffx.31867.1.S1_x_at1/116+3741797..3742687hypothetical protein
LOC_Os06g07740OsAffx.4756.1.S1_s_at11/116+3746262..3748210myb-like DNA-binding domain, SHAQKYF class family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15300.1.S1_at--575--1991Chr06:3720655..3720679 (25 bp)
ACTCGAGGAGGCACCCTAGCGACGC
LOC_Os06g07690
OsAffx.15300.1.S1_at--997--10791Chr06:3720682..3720706 (25 bp)
TTGTCAGCGAATCCCCAACAAGCTA
LOC_Os06g07690
OsAffx.15300.1.S1_at--1031--5251Chr06:3720690..3720714 (25 bp)
GAATCCCCAACAAGCTACAAAGAAT
LOC_Os06g07690
OsAffx.15300.1.S1_at--515--5291Chr06:3720711..3720735 (25 bp)
GAATGGCTACACGATAGCTACCTCT
LOC_Os06g07690
OsAffx.15300.1.S1_at--1150--291Chr06:3720724..3720748 (25 bp)
ATAGCTACCTCTTTGGGCGAGTTGA
LOC_Os06g07690
OsAffx.15300.1.S1_at--607--8871Chr06:3720746..3720770 (25 bp)
TGAGGAACTTGCAATTCGCGAGGAA
LOC_Os06g07690
OsAffx.15300.1.S1_at--237--2771Chr06:3721864..3721888 (25 bp)
AAGACTGGCTCGCAATTCCTTGTGA
LOC_Os06g07690
OsAffx.15300.1.S1_at--1070--10671Chr06:3721879..3721903 (25 bp)
TTCCTTGTGAGTTGCAGAGTTTTCC
LOC_Os06g07690
OsAffx.15300.1.S1_at--1022--6051Chr06:3721887..3721911 (25 bp)
GAGTTGCAGAGTTTTCCAAGAGATA
LOC_Os06g07690
OsAffx.15300.1.S1_at--500--1411Chr06:3721915..3721939 (25 bp)
AGAAAGGAACTTGCCATTTTGCCAA
LOC_Os06g07690
OsAffx.15300.1.S1_at--1086--4431Chr06:3721927..3721951 (25 bp)
GCCATTTTGCCAAGACGAGAGCAGT
LOC_Os06g07690
Target Sequence 
ACTCGAGGAGGCACCCTAGCGACGCCCTTGTCAGCGAATCCCCAACAAGCTACAAAGAATGGCTACACGATAGCTACCTC
TTTGGGCGAGTTGAGGAACTTGCAATTCGCGAGGAAGAGGAAAGACAAAATTGTGAAATTGTTCAAGTGAAAGGTGGCAA
GATAATGATTGCCTTTGGGGCCTGTTTTCCACAAGACTGGCTCGCAATTCCTTGTGAGTTGCAGAGTTTTCCAAGAGATA
AAAAGAAAGGAACTTGCCATTTTGCCAAGACGAGAGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis