Browse Element(s) Details


OsAffx.27494.2.S1_s_at

Description tigr:9634.m00699
TID=OsAffx.27494.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=myb-like DNA-binding domain, SHAQKYF class, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0766011/11myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g0765011/11myb-like DNA-binding domain, SHAQKYF class family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07620OsAffx.30150.7.S1_x_at11/116+3681378..3687678expressed protein
LOC_Os06g07620Os.27612.1.S1_at1/116+3681378..3687678expressed protein
LOC_Os06g07630Os.15233.1.S1_at11/116+3688677..369333026S protease regulatory subunit 6A homolog, putative, expressed
LOC_Os06g07640OsAffx.27493.1.S1_at11/116+3695118..3696877myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g07650OsAffx.27494.2.S1_s_at11/116+3701157..3703237myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g07660OsAffx.27494.2.S1_s_at11/116+3706187..3710819myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g07670NANA6+3712856..3713320retrotransposon protein, putative, unclassified
LOC_Os06g07679OsAffx.22452.1.S1_x_at1/116+3714109..3714314NA
LOC_Os06g07690OsAffx.15300.1.S1_at11/116+3720624..3722003hypothetical protein
LOC_Os06g07700OsAffx.4756.1.S1_s_at11/116+3722343..3724139hypothetical protein
LOC_Os06g07710NANA6+3732347..3735479hypothetical protein
LOC_Os06g07720OsAffx.8279.1.S1_at1/116+3735816..3741496retrotransposon protein, putative, unclassified
LOC_Os06g07720Os.52731.1.S1_at1/116+3735816..3741496retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27494.2.S1_s_at--474--3232Chr06:3706700..3706724 (25 bp)
CAAGACGCCGGTGCAGGTGTCCAGC
LOC_Os06g07660
OsAffx.27494.2.S1_s_at--107--4352Chr06:3706670..3706694 (25 bp)
CCAGAAGTACTTCCGCCGCGTGGAG
LOC_Os06g07660
OsAffx.27494.2.S1_s_at--1153--2712Chr06:3706630..3706654 (25 bp)
AAGCAGCGCTACAGCATCAACGACG
LOC_Os06g07660
OsAffx.27494.2.S1_s_at--939--5132Chr06:3706557..3706581 (25 bp)
GCAACAATAACTTCGGTGGCTGGCA
LOC_Os06g07660
OsAffx.27494.2.S1_s_at--695--8972Chr06:3706437..3706461 (25 bp)
TGAACAGCGCCGCTCAGTTCTGGGC
LOC_Os06g07660
OsAffx.27494.2.S1_s_at--591--1232Chr06:3706422..3706446 (25 bp)
AGTTCTGGGCTCCTATGCTGTTCAA
LOC_Os06g07660
OsAffx.27494.2.S1_s_at--970--6552Chr06:3706391..3706415 (25 bp)
GATTCAGCAGCAGTTCATGCAGATG
LOC_Os06g07660
OsAffx.27494.2.S1_s_at--12--5072Chr06:3706355..3706379 (25 bp)
GCAGCAGGCGTGGAATGATCAGCAT
LOC_Os06g07660
OsAffx.27494.2.S1_s_at--387--8032Chr06:3706307..3706331 (25 bp)
GGAGGGAGCAACTGATACTAACTTT
LOC_Os06g07660
OsAffx.27494.2.S1_s_at--925--9892Chr06:3706292..3706316 (25 bp)
TACTAACTTTGAGCCTGCAGGTGCA
LOC_Os06g07660
OsAffx.27494.2.S1_s_at--218--7332Chr06:3706221..3706245 (25 bp)
GTGCTTATGGTGTTCCTGCGGATCA
LOC_Os06g07660
Target Sequence 
CAAGACGCCGGTGCAGGTGTCCAGCCACGCCCAGAAGTACTTCCGCCGCGTGGAGAGCGCCGCCGCCGACAAGCAGCGCT
ACAGCATCAACGACGTCGGCCTCAACGACGACACCGCCGCCATGGACGGCACCAACAGCTACAGCAACAATAACTTCGGT
GGCTGGCAGAGTCTCGCCTTCGCCGGCGGCCACCTCGAGCCCGTCAGCGGCGGCGGCGCCGCCAGGCAAGTCATCGCTCC
GGCGAGCTCCTCCGCCGCTGCCATGAACAGCGCCGCTCAGTTCTGGGCTCCTATGCTGTTCAACCCCCAGATTCAGCAGC
AGTTCATGCAGATGCAGGCGCAGACGCAGCAGGCGTGGAATGATCAGCATATGATGATGGCTGCTGCTCCAATGGAGGGA
GCAACTGATACTAACTTTGAGCCTGCAGGTGCAGTTAATTATTATTATTATCAACAGCAGCAGGAGGAGGAGGAGGGAGG
TGCTTATGGTGTTCCTGCGGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27494.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis