Browse Element(s) Details


Os.15233.1.S1_at

Description gb:AK065612.1
DB_XREF= gi:32975630
TID=Os.15233.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15233 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsRPT5b mRNA for 26S proteasome regulatory particle triple-A ATPase subunit5b, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026E01, full insert sequence.
FL= gb:AK065612.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0763011/1126S protease regulatory subunit 6A homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07600Os.27290.1.A1_at11/116+3674581..3677842alkaline alpha galactosidase 2, putative, expressed
LOC_Os06g07620OsAffx.30150.7.S1_x_at11/116+3681378..3687678expressed protein
LOC_Os06g07620Os.27612.1.S1_at1/116+3681378..3687678expressed protein
LOC_Os06g07630Os.15233.1.S1_at11/116+3688677..369333026S protease regulatory subunit 6A homolog, putative, expressed
LOC_Os06g07640OsAffx.27493.1.S1_at11/116+3695118..3696877myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g07650OsAffx.27494.2.S1_s_at11/116+3701157..3703237myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g07660OsAffx.27494.2.S1_s_at11/116+3706187..3710819myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g07670NANA6+3712856..3713320retrotransposon protein, putative, unclassified
LOC_Os06g07679OsAffx.22452.1.S1_x_at1/116+3714109..3714314NA

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0005516molecular_functioncalmodulin binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15233.1.S1_at--278--5891Chr06:3691825..3692176 (25 bp)
GAGCGGATAAAGGTCATAGCGGCAA
LOC_Os06g07630
Os.15233.1.S1_at--729--6371Chr06:3692197..3692221 (25 bp)
GATCCTGCTTTGATGCGATCTGGTC
LOC_Os06g07630
Os.15233.1.S1_at--591--9131Chr06:3692210..3692234 (25 bp)
TGCGATCTGGTCGTTTGGACCGAAA
LOC_Os06g07630
Os.15233.1.S1_at--582--8311Chr06:3692437..3692461 (25 bp)
GGCTCGCTCAACAGATGACTTCAAT
LOC_Os06g07630
Os.15233.1.S1_at--1006--5871Chr06:3692463..3692487 (25 bp)
GAGCGCAACTGAAAGCTGTTTGTGT
LOC_Os06g07630
Os.15233.1.S1_at--674--3871Chr06:3692478..3692502 (25 bp)
CTGTTTGTGTCGAAGCTGGTATGCT
LOC_Os06g07630
Os.15233.1.S1_at--428--8591Chr06:3692494..3692518 (25 bp)
TGGTATGCTTGCACTGCGGCGAGAT
LOC_Os06g07630
Os.15233.1.S1_at--603--7371Chr06:3693074..3693098 (25 bp)
GTGACTCATGAGGACTTCAACGAAG
LOC_Os06g07630
Os.15233.1.S1_at--204--3071Chr06:3693165..3693189 (25 bp)
AATCATCAGGGCTCTGGAGTTGTTT
LOC_Os06g07630
Os.15233.1.S1_at--1002--8031Chr06:3693180..3693204 (25 bp)
GGAGTTGTTTGTAACCATACTGTTT
LOC_Os06g07630
Os.15233.1.S1_at--724--851Chr06:3693219..3693243 (25 bp)
ATGGCTTCACGTTTCATTTGAGGTA
LOC_Os06g07630
Target Sequence 
GAGCGGATAAAGGTCATAGCGGCAACGAATCGTGCNTGACATTCTTGATCCTGCTTTGATGCGATCTGGTCGTTTGGACC
GAAAGATTGAGTTTCCTCATCCATCTGAAGAAGCAAGAGCTAGAATCTTGCAAATTCACTCAAGAAAAATGAATGTAAAC
CCAGATGTGAATTTTGAAGAGCTGGCTCGCTCAACAGATGACTTCAATGGAGCGCAACTGAAAGCTGTTTGTGTCGAAGC
TGGTATGCTTGCACTGCGGCGAGATGCTACAGAGGTGACTCATGAGGACTTCAACGAAGGCATAATACAGGTGCAGGCTA
AGAAGAAGTCTAGCCTAAATTATTACGCTTAACANAGCTATGCTAGAATCATCAGGGCTCTGGAGTTGTTTGTAACCATA
CTGTTTGGATAATCGAAAATATGGCTTCACGTTTCATTTGAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis