Browse Element(s) Details


OsAffx.30150.7.S1_x_at

Description tigr:9634.m00695
TID=OsAffx.30150.7
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0762011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07590OsAffx.17307.2.S1_at11/116+3659018..3660324Leucine Rich Repeat family protein
LOC_Os06g07590OsAffx.17307.2.S1_x_at11/116+3659018..3660324Leucine Rich Repeat family protein
LOC_Os06g07590OsAffx.27611.1.S1_at1/116+3659018..3660324Leucine Rich Repeat family protein
LOC_Os06g07600Os.27290.1.A1_at11/116+3674581..3677842alkaline alpha galactosidase 2, putative, expressed
LOC_Os06g07620OsAffx.30150.7.S1_x_at11/116+3681378..3687678expressed protein
LOC_Os06g07620Os.27612.1.S1_at1/116+3681378..3687678expressed protein
LOC_Os06g07630Os.15233.1.S1_at11/116+3688677..369333026S protease regulatory subunit 6A homolog, putative, expressed
LOC_Os06g07640OsAffx.27493.1.S1_at11/116+3695118..3696877myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g07650OsAffx.27494.2.S1_s_at11/116+3701157..3703237myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g07660OsAffx.27494.2.S1_s_at11/116+3706187..3710819myb-like DNA-binding domain, SHAQKYF class family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30150.7.S1_x_at--103--5551Chr06:3687007..3687031 (25 bp)
GAAACTCTGGCTCAAGATCATCATG
LOC_Os06g07620
OsAffx.30150.7.S1_x_at--639--8811Chr06:3687058..3687082 (25 bp)
TGATTGTTCCTTCCTTCAAAAGCAG
LOC_Os06g07620
OsAffx.30150.7.S1_x_at--753--631Chr06:3687086..3687110 (25 bp)
ATGCTACTTCAAGCGGCAGTCAGTC
LOC_Os06g07620
OsAffx.30150.7.S1_x_at--600--491Chr06:3687117..3687141 (25 bp)
ATCGTCCCATTTCGGTTGCAACTAC
LOC_Os06g07620
OsAffx.30150.7.S1_x_at--732--6651Chr06:3687131..3687155 (25 bp)
GTTGCAACTACACCAGCCTGGAGAG
LOC_Os06g07620
OsAffx.30150.7.S1_x_at--206--731Chr06:3687165..3687189 (25 bp)
ATGATATCTCAACCTTGCAGCACTC
LOC_Os06g07620
OsAffx.30150.7.S1_x_at--1071--411Chr06:3687190..3687214 (25 bp)
ATCATTCTCCCTTTCTAAACTGGAT
LOC_Os06g07620
OsAffx.30150.7.S1_x_at--538--2431Chr06:3687235..3687259 (25 bp)
AAAAGATCTTACTGACCCTTGCACT
LOC_Os06g07620
OsAffx.30150.7.S1_x_at--570--3031Chr06:3687266..3687290 (25 bp)
AATGCCATCGCGCTCGAAGAAATCG
LOC_Os06g07620
OsAffx.30150.7.S1_x_at--1025--6691Chr06:3687431..3687455 (25 bp)
GTTCCTCCTGGTAATTTTAGCTCTA
LOC_Os06g07620
OsAffx.30150.7.S1_x_at--630--7951Chr06:3687460..3687484 (25 bp)
GGATACTGATGCTGATGCCTTCTCA
LOC_Os06g07620
Target Sequence 
GAAACTCTGGCTCAAGATCATCATGTGCCTAAAGATGAGCAAGCTCATCAATGATTGTTCCTTCCTTCAAAAGCAGCAAA
TGCTACTTCAAGCGGCAGTCAGTCACCCACATCGTCCCATTTCGGTTGCAACTACACCAGCCTGGAGAGCATCAAGATAT
GATATCTCAACCTTGCAGCACTCATCATTCTCCCTTTCTAAACTGGATAAATTGCCAATGGAGAGAAGAAAAGATCTTAC
TGACCCTTGCACTCCTCACAATGCCATCGCGCTCGAAGAAATCGACATTTTGAGGAAGTTCAAACACCCAATTTCTGAGT
TGGAGAAGAATGATGAATCTATTAAGATCTCTGTGGGTCTAGGGAGAAAGAGGTTGAAGATCATGAAGTACTCAATGAAG
CCAAGGGAACCTGGAAAAAGTACAGTTCCTCCTGGTAATTTTAGCTCTAAAAAGGATACTGATGCTGATGCCTTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30150.7.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis