Browse Element(s) Details


Os.27290.1.A1_at

Description gb:CB657586
DB_XREF= gi:29661311
DB_XREF=OSJNEc13A24.r
CLONE=OSJNEc13A24
TID=Os.27290.1
CNT=49
FEA=EST
TIER=Stack
STK=6
UG=Os.27290 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_197525.1 (A.thaliana) seed imbitition protein-like (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0760011/11alkaline alpha galactosidase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07560Os.21847.1.S1_at11/116+3648518..3649687EF hand family protein, expressed
LOC_Os06g07570OsAffx.8513.1.S1_s_at1/116+3654070..3654535transposon protein, putative, unclassified
LOC_Os06g07580NANA6+3655503..365609840S ribosomal protein S30, putative, expressed
LOC_Os06g07590OsAffx.17307.2.S1_at11/116+3659018..3660324Leucine Rich Repeat family protein
LOC_Os06g07590OsAffx.17307.2.S1_x_at11/116+3659018..3660324Leucine Rich Repeat family protein
LOC_Os06g07590OsAffx.27611.1.S1_at1/116+3659018..3660324Leucine Rich Repeat family protein
LOC_Os06g07600Os.27290.1.A1_at11/116+3674581..3677842alkaline alpha galactosidase 2, putative, expressed
LOC_Os06g07620OsAffx.30150.7.S1_x_at11/116+3681378..3687678expressed protein
LOC_Os06g07620Os.27612.1.S1_at1/116+3681378..3687678expressed protein
LOC_Os06g07630Os.15233.1.S1_at11/116+3688677..369333026S protease regulatory subunit 6A homolog, putative, expressed
LOC_Os06g07640OsAffx.27493.1.S1_at11/116+3695118..3696877myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os06g07650OsAffx.27494.2.S1_s_at11/116+3701157..3703237myb-like DNA-binding domain, SHAQKYF class family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27290.1.A1_at--955--411Chr06:3675327..3675351 (25 bp)
ATCTTGTAGTCCTTCCAAATGGCGC
LOC_Os06g07600
Os.27290.1.A1_at--1010--10811Chr06:3675277..3675301 (25 bp)
TTGGAACATGACATCCTCACCGTGT
LOC_Os06g07600
Os.27290.1.A1_at--908--9691Chr06:3675130..3675151 (22 bp)
TCAAGGATTTGGCACCCGGATTCAG
LOC_Os06g07600
Os.27290.1.A1_at--193--6571Chr06:3675112..3675136 (25 bp)
GATTCAGGTTTGCACCAATCGGGCT
LOC_Os06g07600
Os.27290.1.A1_at--607--3051Chr06:3675096..3675120 (25 bp)
AATCGGGCTAGTCGACATGTTCAAC
LOC_Os06g07600
Os.27290.1.A1_at--489--7151Chr06:3675037..3675061 (25 bp)
GTCTCGACGGCGTAAAGTCACTCAG
LOC_Os06g07600
Os.27290.1.A1_at--262--2331Chr06:3674925..3674949 (25 bp)
AAAGTTTGGTGCCTACTCTTCAGTC
LOC_Os06g07600
Os.27290.1.A1_at--324--2851Chr06:3674891..3674915 (25 bp)
AAGTGCATGCTAGGCTCAGCTCAGG
LOC_Os06g07600
Os.27290.1.A1_at--662--7511Chr06:3674867..3674891 (25 bp)
GTGGAGTTCACCTATGATTCCTCAT
LOC_Os06g07600
Os.27290.1.A1_at--921--10751Chr06:3674827..3674851 (25 bp)
TTGACCTGGAGACCATGCCCAAGGA
LOC_Os06g07600
Os.27290.1.A1_at--9--5291Chr06:3674732..3674756 (25 bp)
GAATGTGAGCTCTTGTGAGTCCATT
LOC_Os06g07600
Target Sequence 
ATCTTGTAGTCCTTCCAAATGGCGCAGCACTGCCCATCTCCCTCAAGGTCTTGGAACATGACATCCTCACCGTGTCCCCA
ATCAAGGATTTGGCACCCGGATTCAGGTTTGCACCAATCGGGCTAGTCGACATGTTCAACAGCGGGGCAGCGGTCGAAGG
CCTGACCTATCATCGTCTCGACGGCGTAAAGTCACTCAGCAATGGCTNTGCTTCCACCTTGCCTGAGCTTCAGAGCTTGA
GCTCCCAGGCCATCGGATTGGTCTGCATGGAAGTGAGGGGATGTGGAAAGTTTGGTGCCTACTCTTCAGTCAGGCCAAGA
AAGTGCATGCTAGGCTCAGCTCAGGTGGAGTTCACCTATGATTCCTCATCTGGGCTGGTGATCCTTGACCTGGAGACCAT
GCCCAAGGAAAGGGTTCACAAGATTGTTGTTGAGTTGTAAGATTCATTGTAGTGGTATCACTGTATCACAAACACATCAG
AATGTGAGCTCTTGTGAGTCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27290.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis