Browse Element(s) Details


Os.21847.1.S1_at

Description gb:AK105920.1
DB_XREF= gi:32991129
TID=Os.21847.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.21847 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A03, full insert sequence.
FL= gb:AK105920.1 gb:AK070725.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0756011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07530NANA6+3623428..3629198retrotransposon protein, putative, unclassified
LOC_Os06g07540Os.9960.1.S1_at11/116+3631671..3638604expressed protein
LOC_Os06g07550Os.52679.1.S1_at11/116+3639787..3642652pentatricopeptide, putative, expressed
LOC_Os06g07560Os.21847.1.S1_at11/116+3648518..3649687EF hand family protein, expressed
LOC_Os06g07570OsAffx.8513.1.S1_s_at1/116+3654070..3654535transposon protein, putative, unclassified
LOC_Os06g07580NANA6+3655503..365609840S ribosomal protein S30, putative, expressed
LOC_Os06g07590OsAffx.17307.2.S1_at11/116+3659018..3660324Leucine Rich Repeat family protein
LOC_Os06g07590OsAffx.17307.2.S1_x_at11/116+3659018..3660324Leucine Rich Repeat family protein
LOC_Os06g07590OsAffx.27611.1.S1_at1/116+3659018..3660324Leucine Rich Repeat family protein
LOC_Os06g07600Os.27290.1.A1_at11/116+3674581..3677842alkaline alpha galactosidase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21847.1.S1_at--627--9591Chr06:3649255..3649279 (25 bp)
TCAAGGCCTAGCACCAAGGCGGGCA
LOC_Os06g07560
Os.21847.1.S1_at--85--2951Chr06:3649270..3649294 (25 bp)
AAGGCGGGCAATCTCCAACTTCTAT
LOC_Os06g07560
Os.21847.1.S1_at--285--1691Chr06:3649312..3649336 (25 bp)
ACCAAAATTCGGAGCGGATTCGCAA
LOC_Os06g07560
Os.21847.1.S1_at--199--7051Chr06:3649343..3649367 (25 bp)
GTAACCTCAATTTGTTCTTGGACAC
LOC_Os06g07560
Os.21847.1.S1_at--600--10551Chr06:3649357..3649381 (25 bp)
TTCTTGGACACGACGAGGCTCGCAG
LOC_Os06g07560
Os.21847.1.S1_at--804--2751Chr06:3649440..3649464 (25 bp)
AAGACTAACCAGCTTCTTCTTCTCG
LOC_Os06g07560
Os.21847.1.S1_at--895--6831Chr06:3649475..3649499 (25 bp)
GTTTCTTCCCACCTGTTCTTGATCA
LOC_Os06g07560
Os.21847.1.S1_at--944--10351Chr06:3649524..3649548 (25 bp)
TTTTTGCAGTCTAATTAACCTCGTA
LOC_Os06g07560
Os.21847.1.S1_at--305--9811Chr06:3649539..3649563 (25 bp)
TAACCTCGTAATTCAGTGCCTGTTT
LOC_Os06g07560
Os.21847.1.S1_at--282--7291Chr06:3649554..3649578 (25 bp)
GTGCCTGTTTTGACTGACAAGTTTC
LOC_Os06g07560
Os.21847.1.S1_at--283--211Chr06:3649595..3649619 (25 bp)
ATATTAGTTCCTGCTACCTACTGTC
LOC_Os06g07560
Target Sequence 
TCAAGGCCTAGCACCAAGGCGGGCAATCTCCAACTTCTATCAAATTNAAATTCAAAAACCAAAATTCGGAGCGGATTCGC
AAAGGCAAGTAACCTCAATTTGTTCTTGGACACGACGAGGCTCGCAGATCGATCGGCGGGAGAGAGAAATCAAAGCAAAA
AATCAATTGTTTGTGAGTGGAGTTGAAGACTAACCAGCTTCTTCTTCTCGCTCGCTTTGTGTTTCTTCCCACCTGTTCTT
GATCACTTTCTTTGGTTTTTTTTCTCTCTTTTTTGCAGTCTAATTAACCTCGTAATTCAGTGCCTGTTTTGACTGACAAG
TTTCAAATATATGCATGTAAATATTAGTTCCTGCTACCTACTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis