Browse Element(s) Details


Os.52679.1.S1_at

Description gb:AK068738.1
DB_XREF= gi:32978757
TID=Os.52679.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52679 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158I18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158I18, full insert sequence.
FL= gb:AK068738.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0755011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07520OsAffx.22947.1.S1_x_at11/116+3614983..3619557retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g07520OsAffx.22947.3.S1_x_at4/116+3614983..3619557retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g07520OsAffx.22947.2.S1_x_at4/116+3614983..3619557retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g07520OsAffx.22947.5.S1_x_at3/116+3614983..3619557retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g07530NANA6+3623428..3629198retrotransposon protein, putative, unclassified
LOC_Os06g07540Os.9960.1.S1_at11/116+3631671..3638604expressed protein
LOC_Os06g07550Os.52679.1.S1_at11/116+3639787..3642652pentatricopeptide, putative, expressed
LOC_Os06g07560Os.21847.1.S1_at11/116+3648518..3649687EF hand family protein, expressed
LOC_Os06g07570OsAffx.8513.1.S1_s_at1/116+3654070..3654535transposon protein, putative, unclassified
LOC_Os06g07580NANA6+3655503..365609840S ribosomal protein S30, putative, expressed
LOC_Os06g07590OsAffx.17307.2.S1_at11/116+3659018..3660324Leucine Rich Repeat family protein
LOC_Os06g07590OsAffx.17307.2.S1_x_at11/116+3659018..3660324Leucine Rich Repeat family protein
LOC_Os06g07590OsAffx.27611.1.S1_at1/116+3659018..3660324Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52679.1.S1_at--793--491Chr06:3641671..3641695 (25 bp)
ATCGTGTTCAGTACCTACGGGACTT
LOC_Os06g07550
Os.52679.1.S1_at--879--2971Chr06:3641801..3641825 (25 bp)
AATGGTGATATTTGTTCTCCGTAAT
LOC_Os06g07550
Os.52679.1.S1_at--135--8151Chr06:3641840..3641864 (25 bp)
GGAACAACCTGTAAGAACTCCAGTT
LOC_Os06g07550
Os.52679.1.S1_at--942--1411Chr06:3641870..3641894 (25 bp)
AGACACATCAATCTTAGCCTGCTCT
LOC_Os06g07550
Os.52679.1.S1_at--951--1671Chr06:3641885..3641909 (25 bp)
AGCCTGCTCTTTGTAGGTAGCTTCA
LOC_Os06g07550
Os.52679.1.S1_at--505--7851Chr06:3641900..3641924 (25 bp)
GGTAGCTTCATTGTTACTTATTCAA
LOC_Os06g07550
Os.52679.1.S1_at--494--8071Chr06:3641977..3642001 (25 bp)
GGAGCTATTTGACTGCATCTGGCAA
LOC_Os06g07550
Os.52679.1.S1_at--478--1991Chr06:3642003..3642027 (25 bp)
ACTGCCTATGGTTATGGCATCCCAT
LOC_Os06g07550
Os.52679.1.S1_at--804--5291Chr06:3642103..3642127 (25 bp)
GAAGGCCTTGACGAACAGTGAATCT
LOC_Os06g07550
Os.52679.1.S1_at--47--7351Chr06:3642120..3642144 (25 bp)
GTGAATCTTAAGTGTCGGTGACCAA
LOC_Os06g07550
Os.52679.1.S1_at--126--51Chr06:3642153..3642177 (25 bp)
ATTGTGCTGTGCTGTTGTGACTTGA
LOC_Os06g07550
Target Sequence 
ATCGTGTTCAGTACCTACGGGACTTAAAAGACGGGCGATCTAAAGATAACATATAGGCACTAACACTAAGCAGACAATGT
CAGAACTTCAGTTTGCAAGATGGAACAACCTGTCAGAACACTAAGCAGACAATGGTGATATTTGTTCTCCGTAATTTTCC
AAGAAAGATGGAACAACCTGTAAGAACTCCAGTTAGCAGAGACACATCAATCTTAGCCTGCTCTTTGTAGGTAGCTTCAT
TGTTACTTATTCAACATGTAATGTACACAACACAACAATGAAAGTTTGTTTTACGATCTTAACAATGGAGCTATTTGACT
GCATCTGGCAAAACTGCCTATGGTTATGGCATCCCATAAATGAATTATGTCTTGAGGATCTGAGCAAGATTTTGCTATCC
GAGCAAACGGATCAGGACAATGAAATAAAGAAGAAGGCCTTGACGAACAGTGAATCTTAAGTGTCGGTGACCAATCAGTT
AGATTGTGCTGTGCTGTTGTGACTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis