Browse Element(s) Details


Os.9960.1.S1_at

Description gb:AK100886.1
DB_XREF= gi:32986095
TID=Os.9960.1
CNT=60
FEA=FLmRNA
TIER=FL+Stack
STK=19
UG=Os.9960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-046-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023128H22, full insert sequence.
FL= gb:AK100886.1 gb:AK105084.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0754011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07500NANA6+3607449..3610769retrotransposon protein, putative, unclassified
LOC_Os06g07510NANA6+3611417..3611752retrotransposon protein, putative, unclassified
LOC_Os06g07520OsAffx.22947.1.S1_x_at11/116+3614983..3619557retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g07520OsAffx.22947.3.S1_x_at4/116+3614983..3619557retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g07520OsAffx.22947.2.S1_x_at4/116+3614983..3619557retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g07520OsAffx.22947.5.S1_x_at3/116+3614983..3619557retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g07530NANA6+3623428..3629198retrotransposon protein, putative, unclassified
LOC_Os06g07540Os.9960.1.S1_at11/116+3631671..3638604expressed protein
LOC_Os06g07550Os.52679.1.S1_at11/116+3639787..3642652pentatricopeptide, putative, expressed
LOC_Os06g07560Os.21847.1.S1_at11/116+3648518..3649687EF hand family protein, expressed
LOC_Os06g07570OsAffx.8513.1.S1_s_at1/116+3654070..3654535transposon protein, putative, unclassified
LOC_Os06g07580NANA6+3655503..365609840S ribosomal protein S30, putative, expressed
LOC_Os06g07590OsAffx.17307.2.S1_at11/116+3659018..3660324Leucine Rich Repeat family protein
LOC_Os06g07590OsAffx.17307.2.S1_x_at11/116+3659018..3660324Leucine Rich Repeat family protein
LOC_Os06g07590OsAffx.27611.1.S1_at1/116+3659018..3660324Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9960.1.S1_at--287--7171Chr06:3637907..3637931 (25 bp)
GTCTGGGACGTACGAAACCTGTCAA
LOC_Os06g07540
Os.9960.1.S1_at--1122--871Chr06:3637992..3638016 (25 bp)
ATGGCCAGTTCATGCTCTTCTCGGA
LOC_Os06g07540
Os.9960.1.S1_at--270--4571Chr06:3638043..3638067 (25 bp)
GCGCCGCTGCGGACTACAAGAAGAG
LOC_Os06g07540
Os.9960.1.S1_at--848--6491Chr06:3638074..3638098 (25 bp)
GATAGATTTCTTCGGCGAGATCTCC
LOC_Os06g07540
Os.9960.1.S1_at--651--10451Chr06:3638109..3638133 (25 bp)
TTAGCCCAGACGACGAGTCACTGTT
LOC_Os06g07540
Os.9960.1.S1_at--248--1171Chr06:3638124..3638148 (25 bp)
AGTCACTGTTCGTCGGAGTGTGCGA
LOC_Os06g07540
Os.9960.1.S1_at--937--4411Chr06:3638159..3638183 (25 bp)
GCCAGCTTGCTGCACTACAGAATGG
LOC_Os06g07540
Os.9960.1.S1_at--749--9851Chr06:3638174..3638198 (25 bp)
TACAGAATGGTCCACTCCTTTGGAT
LOC_Os06g07540
Os.9960.1.S1_at--1147--7931Chr06:3638195..3638219 (25 bp)
GGATACCTCGACTCGTTCATGTAGA
LOC_Os06g07540
Os.9960.1.S1_at--877--10111Chr06:3638244..3638268 (25 bp)
TATGTGATAGGCCACCCATCTCGGT
LOC_Os06g07540
Os.9960.1.S1_at--212--7551Chr06:3638267..3638291 (25 bp)
GTGGCGATTCTGATGTGCGTGTTCA
LOC_Os06g07540
Target Sequence 
GTCTGGGACGTACGAAACCTGTCAACCTCCCTCTCAGTACTTAGGGGCAACATTGGCGCTATCCGTTGCATCCGCTACTC
CTCNGATGGCCAGTTCATGCTCTTCTCGGAGCCCGCTGACTTCGTGCACGTCTACAGCGCCGCTGCGGACTACAAGAAGA
GGCAGGAGATAGATTTCTTCGGCGAGATCTCCGGCATCTCGCTTAGCCCAGACGACGAGTCACTGTTCGTCGGAGTGTGC
GACCGTGTGTACGCCAGCTTGCTGCACTACAGAATGGTCCACTCCTTTGGATACCTCGACTCGTTCATGTAGAGAGGGAA
TAAAAGTGGTGTTTCTGTATGTGATAGGCCACCCATCTCGGTGGCGATTCTGATGTGCGTGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis