Browse Element(s) Details


OsAffx.22642.1.S1_x_at

Description tigr:9631.m05996
TID=OsAffx.22642.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g226801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22630Os.5353.1.S1_at11/1110+11426685..11428017expressed protein
LOC_Os10g22630OsAffx.6388.1.A1_x_at1/1110+11426685..11428017expressed protein
LOC_Os10g22640NANA10+11433620..11439775retrotransposon protein, putative, unclassified
LOC_Os10g22650Os.28943.1.S1_x_at1/1110+11440409..11443587transposon protein, putative, unclassified
LOC_Os10g22660OsAffx.20435.1.S1_at11/1110+11447754..11448221hypothetical protein
LOC_Os10g22670OsAffx.30501.1.S1_at10/1110+11448576..11449285hypothetical protein
LOC_Os10g22680OsAffx.30502.1.S1_x_at11/1110+11451129..11451915hypothetical protein
LOC_Os10g22680OsAffx.30502.1.S1_at11/1110+11451129..11451915hypothetical protein
LOC_Os10g22680OsAffx.22642.1.S1_x_at1/1110+11451129..11451915hypothetical protein
LOC_Os10g22690Os.52765.1.S1_at4/1110+11453165..11455525hypothetical protein
LOC_Os10g22700OsAffx.20433.1.S1_x_at11/1110+11460867..11461716expressed protein
LOC_Os10g22710OsAffx.6736.1.S1_x_at11/1110+11464845..11466882expressed protein
LOC_Os10g22710OsAffx.6736.1.S1_at11/1110+11464845..11466882expressed protein
LOC_Os10g22710OsAffx.28845.1.S1_x_at1/1110+11464845..11466882expressed protein
LOC_Os10g22720OsAffx.30503.1.S1_at11/1110+11469998..11473960hypothetical protein
LOC_Os10g22730Os.7322.1.S1_at11/1110+11475856..11481847expressed protein
LOC_Os10g22730Os.52023.1.S1_at10/1110+11475856..11481847expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22642.1.S1_x_at--559--3772Chr10:17386586..17386606 (21 bp)
CTCTCTCTCTCATCTACAAGGAGAA
NONE
OsAffx.22642.1.S1_x_at--949--2751Chr03:34518010..34518034 (25 bp)
AAGACTAGAGCAAGGCAGGCGACGA
NONE
OsAffx.22642.1.S1_x_at--316--1491Chr03:34518002..34518026 (25 bp)
AGCAAGGCAGGCGACGACCAGAGCT
NONE
OsAffx.22642.1.S1_x_at--57--5791Chr03:34517990..34518014 (25 bp)
GACGACCAGAGCTGGGCAGGCGGCT
NONE
OsAffx.22642.1.S1_x_at--568--4211Chr03:34517947..34517971 (25 bp)
CCGCGAAGCTGAGCAGAGCAGTAGC
NONE
OsAffx.22642.1.S1_x_at--972--5131Chr03:34517912..34517936 (25 bp)
GCAAAGCAGAGCAGCAGCACGCACG
NONE
OsAffx.22642.1.S1_x_at--54--531Chr03:34517881..34517905 (25 bp)
ATCCCCCGAAGCAGGAGGTGGTCAA
NONE
OsAffx.22642.1.S1_x_at--374--4091Chr03:34517793..34517814 (22 bp)
CGACGCCGATGCCAAGAACATGCTG
NONE
OsAffx.22642.1.S1_x_at--294--3231Chr03:34517598..34517802 (25 bp)
CAAGAACATGCTGGCTCAGCGAGGA
NONE
OsAffx.22642.1.S1_x_at--778--5037Chr10:11451642..11451666 (25 bp)
GCAGCGTGGTGGTGGCCCCGAGCAA
LOC_Os10g22680
OsAffx.22642.1.S1_x_at--191--4711Chr03:34517362..34517386 (25 bp)
GCGGCCGAGCGTGGCGACGACTTGG
NONE
Target Sequence 
CTCTCTCTCTCATCTACAAGGAGAAGACTAGAGCAAGGCAGGCGACGACCAGAGCTGGGCAGGCGGCTGACGGCGGCCGG
AGCTGGCCGCGAAGCTGAGCAGAGCAGTAGCTCAGCGGGGAGCAAAGCAGAGCAGCAGCACGCACGCCCTGGATCCCCCG
AAGCAGGAGGTGGTCAAGCCGTCGCCGCCGGGCCGCATCCGCAACAGCACGCCCTCCTCCCCCAACCTCCTCGTCTCGAG
CGCCGACGCCGATGCCAAGAACATGCTGGCTCAGCGAGGAGGTGCCAGGGCAGCGCCGAGCAGAGGAGGCGGAGGTGGAG
GCGCTGGGTGATCGCGGAGGCGGCGCCCGTGTGGGCCGGCTTGGCCGTGCGCGGGGGCGGTGCTCGCAGCGTGGTGGTGG
CCCCGAGCAAGACGAAGACAGCGGGTGGTGGCGAAGCAGCAGTGGCGCGCGGGTGGTGCTCGCACGGGAGATGTGGCCGC
GCGCAGTGGCAGCGGCCGAGCGTGGCGACGACTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22642.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis