Browse Element(s) Details


OsAffx.22701.1.S1_at

Description tigr:9631.m03552
TID=OsAffx.22701.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g370807/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37030NANA3+20484599..20485066hypothetical protein
LOC_Os03g37050OsAffx.10473.1.S1_at11/113+20500767..20502777transposon protein, putative, Mutator sub-class
LOC_Os03g37060OsAffx.22702.1.S1_at11/113+20503355..20504706transposon protein, putative, Mutator sub-class
LOC_Os03g37070OsAffx.10472.1.S1_at11/113+20505109..20505543Cytochrome P450 71E1, putative
LOC_Os03g37080OsAffx.25393.1.S1_at11/113+20506273..20512643Cytochrome P450 family protein
LOC_Os03g37080OsAffx.22701.1.S1_at7/113+20506273..20512643Cytochrome P450 family protein
LOC_Os03g37090Os.37371.1.S1_at10/113+20513407..20516312Uncharacterised protein family containing protein, expressed
LOC_Os03g37100Os.32970.1.S1_at11/113+20517953..20519695DTW domain containing protein, expressed
LOC_Os03g37110OsAffx.13205.1.S1_at10/113+20520864..20523154hypothetical protein
LOC_Os03g37120Os.33737.1.S1_at11/113+20523944..20527235transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g37130Os.2713.1.S1_at11/113+20528890..20533981Ser/Thr protein phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22701.1.S1_at--948--9951Chr03:20506315..20506339 (25 bp)
TACCTCATCCCCATAGCGATCGATC
LOC_Os03g37080
OsAffx.22701.1.S1_at--503--6395Chr08:8657210..8657234 (25 bp)
GATCGATCGCCCATCAGCATTCCCG
NONE
OsAffx.22701.1.S1_at--799--1531Chr03:20506347..20506371 (25 bp)
AGCATTCCCGGCCTGTTACGCTAGG
LOC_Os03g37080
OsAffx.22701.1.S1_at--789--71Chr03:20506350..20506374 (25 bp)
ATTCCCGGCCTGTTACGCTAGGGAG
LOC_Os03g37080
OsAffx.22701.1.S1_at--734--4451Chr03:20506357..20506380 (24 bp)
GCCTGTTACGCTAGGGAGGCCCAGA
LOC_Os03g37080
OsAffx.22701.1.S1_at--304--10471NONE
TTACGCTAGGGAGGCCCAGAGTTGT
NONE
OsAffx.22701.1.S1_at--458--3691NONE
CTAGGGAGGCCCAGAGTTGTGCCCT
NONE
OsAffx.22701.1.S1_at--570--8011NONE
GGAGGCCCAGAGTTGTGCCCTCGTC
NONE
OsAffx.22701.1.S1_at--150--891NONE
AGGCCCAGAGTTGTGCCCTCGTCGT
NONE
OsAffx.22701.1.S1_at--1115--9671Chr03:20507348..20507372 (25 bp)
TCACGCCGCGCCAGCGTGATAGGAG
LOC_Os03g37080
OsAffx.22701.1.S1_at--45--6011Chr03:20507382..20507406 (25 bp)
GAGAGGGACTGGCAACGCTGGTGAG
LOC_Os03g37080
Target Sequence 
TACCTCATCCCCATAGCGATCGATCGCCCATCAGCATTCCCGGCCTGTTACGCTAGGGAGGCCCAGAGTTGTGCCCTCGT
CGTCTTCACGCCGCGCCAGCGTGATAGGAGGGAGAGGAGGAGAGGGACTGGCAACGCTGGTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22701.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis