Browse Element(s) Details


OsAffx.22785.1.S1_s_at

Description gb:NM_184341.1
DB_XREF= gi:34895761
GEN=P0024G09.27
TID=OsAffx.22785.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0024G09.27 (P0024G09.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0521011/11hypothetical protein
LOC_Os01g0517011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05180OsAffx.23123.1.S1_at11/111+2431644..2432723hypothetical protein
LOC_Os01g05190OsAffx.23121.1.S1_at11/111+2435289..2435925expressed protein
LOC_Os01g05200OsAffx.30226.2.S1_x_at1/111+2438048..2441714retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05200Os.46785.2.S1_x_at1/111+2438048..2441714retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05200OsAffx.442.1.S1_x_at1/111+2438048..2441714retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05210OsAffx.22785.1.S1_s_at11/111+2445518..2445850hypothetical protein
LOC_Os01g05210OsAffx.22785.1.S1_x_at3/111+2445518..2445850hypothetical protein
LOC_Os01g05220OsAffx.23123.1.S1_at11/111+2449393..2450388hypothetical protein
LOC_Os01g05220OsAffx.23018.1.S1_at1/111+2449393..2450388hypothetical protein
LOC_Os01g05230NANA1+2454786..2455254hypothetical protein
LOC_Os01g05240NANA1+2462268..2462616hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22785.1.S1_s_at--478--10652Chr01:2445698..2445722 (25 bp)
TTCCTCGCCGGAATGGGCCAGGTTG
LOC_Os01g05210
OsAffx.22785.1.S1_s_at--479--4532Chr01:2445764..2445788 (25 bp)
GCCGCCGTCGGCAAGAAGATCATGA
LOC_Os01g05210
OsAffx.22785.1.S1_s_at--888--4212Chr01:2445765..2445789 (25 bp)
CCGCCGTCGGCAAGAAGATCATGAT
LOC_Os01g05210
OsAffx.22785.1.S1_s_at--957--4152Chr01:2445766..2445790 (25 bp)
CGCCGTCGGCAAGAAGATCATGATC
LOC_Os01g05210
OsAffx.22785.1.S1_s_at--224--4252Chr01:2445768..2445792 (25 bp)
CCGTCGGCAAGAAGATCATGATCGC
LOC_Os01g05210
OsAffx.22785.1.S1_s_at--454--7192Chr01:2445770..2445794 (25 bp)
GTCGGCAAGAAGATCATGATCGCCT
LOC_Os01g05210
OsAffx.22785.1.S1_s_at--393--8232Chr01:2445773..2445797 (25 bp)
GGCAAGAAGATCATGATCGCCTCCA
LOC_Os01g05210
OsAffx.22785.1.S1_s_at--624--5172Chr01:2445774..2445798 (25 bp)
GCAAGAAGATCATGATCGCCTCCAT
LOC_Os01g05210
OsAffx.22785.1.S1_s_at--35--2752Chr01:2445776..2445800 (25 bp)
AAGAAGATCATGATCGCCTCCATCG
LOC_Os01g05210
OsAffx.22785.1.S1_s_at--900--1452Chr01:2445777..2445801 (25 bp)
AGAAGATCATGATCGCCTCCATCGC
LOC_Os01g05210
OsAffx.22785.1.S1_s_at--547--5352Chr01:2445778..2445802 (25 bp)
GAAGATCATGATCGCCTCCATCGCG
LOC_Os01g05210
Target Sequence 
TTCCTCGCCGGAATGGGCCAGGTTGGCGCGGCCATCTGGGTCGCCGACGACCCACGCGGCCACCGTGCCGCCGTCGGCAA
GAAGATCATGATCGCCTCCATCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22785.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis